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[187678_at]

Description C05D11.1 /REP_DB=WormBase Gene ID /WP=CE03926 /TR=SW:P48053 /GB=AAB53833.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 55      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 67      6grp_total > 56      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1582
1 2 3 4 range
A 2134.2
(-2.2)
P 		2344.6
(-1)
P 		1988.5
(-3)
P 		3070.4
(3)
P 		1082
B 1776.5
(-2.5)
P 		1957.4
(-1.8)
P 		1644.2
(-3)
P 		3225.8
(3)
P 		1582
C 1917.4
(-3)
P 		1918.6
(-3)
P 		2026.6
(-2.4)
P 		2935
(3)
P 		1018
avr 1942.7
(-2.7) 		2073.5
(-2.1) 		1886.4
(-3) 		3077.1
(3) 		1191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 814
1 2 3 4 5 6 range
A 2131.1
(3)
P 		1662
(-1.3)
P 		1706.7
(-0.8)
P 		1807.2
(0.1)
P 		1469.5
(-3)
P 		2020.2
(2)
P 		662
B 1744.3
(0.6)
P 		1825.8
(1.3)
P 		1738
(0.6)
P 		1858.9
(1.6)
P 		1317.1
(-3)
P 		2020.4
(3)
P 		703
C 1761.2
(0.1)
P 		1804.2
(0.5)
P 		2074.6
(3)
P 		1967.6
(2)
P 		1436.4
(-3)
P 		2060.9
(2.9)
P 		638
avr 1878.9
(1.5) 		1764
(0.4) 		1839.8
(1.1) 		1877.9
(1.5) 		1407.7
(-3) 		2033.8
(3) 		626
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 777.1
(3)
P 		509
(-1.9)
P 		519.8
(-1.7)
P 		449.4
(-3)
P 		328
B 566.5
(0.6)
P 		483.4
(-1)
P 		381
(-3)
P 		687.4
(3)
P 		306
C 634.7
(1)
P 		551.6
(-1.4)
P 		706.3
(3)
P 		494.9
(-3)
P 		211
avr 659.4
(3) 		514.7
(-3) 		535.7
(-2.1) 		543.9
(-1.8) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 392.9
(-2.4)
P 		591.1
(3)
P 		371.7
(-3)
P 		458.4
(-0.6)
P 		443.4
(-1)
P 		491.8
(0.3)
P 		219
B 606.9
(0.3)
P 		607.7
(0.4)
P 		422
(-3)
P 		492.4
(-1.7)
P 		535.1
(-1)
P 		753.4
(3)
P 		331
C 652.8
(2.2)
P 		550.5
(0.2)
P 		528
(-0.3)
P 		395.7
(-3)
P 		464.8
(-1.6)
P 		689.9
(3)
P 		294
avr 550.9
(0.2) 		583.1
(1.2) 		440.6
(-3) 		448.8
(-2.8) 		481.1
(-1.8) 		645
(3) 		204
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187678_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7497
Sequence Type Exemplar sequence
Representative Public ID C05D11.1 NCBI
Target Description C05D11.1 /REP_DB=WormBase Gene ID /WP=CE03926 /TR=SW:P48053 /GB=AAB53833.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025974 NCBI Caenorhabditis elegans C05D11.1 (C05D11.1) mRNA, complete cds. 11/11 None
SNAP00000019457 ENSEMBL cdna:SNAP chromosome:CEL140:III:6436555:6439785:1 11/11 None
GENEFINDER00000019470 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6436555:6439785:1 11/11 None
C05D11.1 ENSEMBL cdna:known chromosome:CEL140:III:6436545:6439886:1 gene:C05D11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6436553-6439784(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D11.1
Entrez Gene 175914 Entrez gene
SwissProt P48053 EMBL-EBI
WormBase CE03926 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53833 Hypothetical protein C05D11.1 [Caenorhabditis elegans] ref|NP_001021145.1| C05D11.1 [Caenorhabditis elegans] sp|P48053|YPD1_CAEEL Hypothetical protein C05D11.1 in chromosome III 0.0
blast CAE72493 Hypothetical protein CBG19672 [Caenorhabditis briggsae] 0.0
blast EAA13257 ENSANGP00000003474 [Anopheles gambiae str. PEST] ref|XP_318071.2| ENSANGP00000003474 [Anopheles gambiae str. PEST] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 2.4E-22
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 9.7E-13
Sequence
Target Sequence 
>C. ELEGANS:187678_AT
ttggtggatccgagtcttcattcatctatcaaacaagcttccttgatgctaactggaatt
cagaggagttgattccagcaatgatctttggacaatatctctctcagtgtgaaggtccat
tgtggcgtgcaattcgtggagatggacttgcctatggagctaacgtatttgtgaaacccg
atcggaagcaaatcactttgagtctctacagatgcgctcagccagcagtggcttatgaga
gaaccagagatattattcgcaaaatcgtcgagagcggtgaaatctccaaagcagaatttg
agggagcaaagagatcaactgtgttcgagatgatgaagcgtgaaggaactgtgagtggag
ctgcaaagatcagcattctcaataatttccgtcaaactccccatccattcaatattgatc
tgtgtcgccgtatctggaatctgacatcggaagagatggttaagatcggcggaccaccac
tggctcgtcttttcgatgagaagtgctttgtccgttcaattgctgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTGGATCCGAGTCTTCATTCAT 250 707 2390 Antisense
ATCTTTGGACAATATCTCTCTCAGT 84 33 2473 Antisense
GAAGGTCCATTGTGGCGTGCAATTC 462 335 2500 Antisense
GATGGACTTGCCTATGGAGCTAACG 380 407 2530 Antisense
TGAGTCTCTACAGATGCGCTCAGCC 38 569 2588 Antisense
TCAGCATTCTCAATAATTTCCGTCA 598 623 2759 Antisense
AACTCCCCATCCATTCAATATTGAT 448 141 2784 Antisense
ATCTGTGTCGCCGTATCTGGAATCT 273 35 2807 Antisense
TGGTTAAGATCGGCGGACCACCACT 425 549 2846 Antisense
CACTGGCTCGTCTTTTCGATGAGAA 234 199 2867 Antisense
TGCTTTGTCCGTTCAATTGCTGTTC 70 579 2893 Antisense
Sequence Source Affymetrix Proprietary Database