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[187677_at]

Description F47D12.5 /REP_DB=WormBase Gene ID /WP=CE01949 /TR=SW:Q09562 /GB=AAK20066.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 84.9
(0.2)
P 		5.6
(-3)
A 		75.1
(-0.2)
A 		155.2
(3)
M 		150
B 78.1
(-0.8)
P 		62.7
(-2.6)
A 		59
(-3)
A 		112.1
(3)
P 		53
C 55.8
(-2.6)
A 		54.2
(-2.7)
A 		44.8
(-3)
A 		223.7
(3)
P 		179
avr 72.9
(-1.4) 		40.8
(-3) 		59.6
(-2.1) 		163.7
(3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 79.1
(2.1)
A 		87.7
(3)
A 		39.4
(-1.9)
A 		28.9
(-3)
A 		46.5
(-1.2)
A 		59.1
(0.1)
P 		59
B 72.7
(2.5)
M 		54.9
(0.8)
P 		37
(-0.9)
A 		13.9
(-3)
A 		29.5
(-1.5)
A 		78.4
(3)
P 		65
C 35.4
(-2.4)
A 		75.2
(2.2)
A 		36.2
(-2.3)
A 		42.9
(-1.5)
A 		30.1
(-3)
A 		82.6
(3)
P 		53
avr 62.4
(1.5) 		72.6
(2.9) 		37.5
(-1.8) 		28.6
(-3) 		35.4
(-2.1) 		73.4
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 30.9
(3)
P 		1.2
(-3)
A 		19.6
(0.7)
A 		22.7
(1.3)
M 		30
B 24.9
(3)
P 		15.5
(-2)
A 		13.7
(-3)
A 		23.9
(2.5)
P 		11
C 18.5
(-2.2)
A 		15.6
(-3)
A 		15.6
(-3)
A 		37.7
(3)
P 		22
avr 24.8
(1.9) 		10.8
(-3) 		16.3
(-1.1) 		28.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 14.6
(-1.2)
A 		31.2
(3)
A 		8.6
(-2.7)
A 		7.3
(-3)
A 		14
(-1.3)
A 		14.4
(-1.2)
P 		24
B 25.3
(2.1)
M 		18.3
(0.4)
P 		9
(-1.8)
A 		3.7
(-3)
A 		12
(-1.1)
A 		29.3
(3)
P 		26
C 13.1
(-1.6)
A 		22.9
(1.5)
A 		9.2
(-2.8)
A 		8.6
(-3)
A 		9.7
(-2.7)
A 		27.7
(3)
P 		19
avr 17.7
(0.8) 		24.1
(3) 		8.9
(-2.2) 		6.5
(-3) 		11.9
(-1.2) 		23.8
(2.9) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187677_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7744
Sequence Type Exemplar sequence
Representative Public ID F47D12.5 NCBI
Target Description F47D12.5 /REP_DB=WormBase Gene ID /WP=CE01949 /TR=SW:Q09562 /GB=AAK20066.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065977(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065977 NCBI Caenorhabditis elegans F47D12.5 (F47D12.5) mRNA, complete cds. 11/11 None
SNAP00000002703 ENSEMBL cdna:SNAP chromosome:CEL140:III:6282384:6285884:-1 11/11 None
GENEFINDER00000002713 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6282481:6285884:-1 9/11 None
F47D12.5 ENSEMBL cdna:known chromosome:CEL140:III:6282384:6285602:-1 gene:F47D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6282382-6285601(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47D12.5
Entrez Gene 185933 Entrez gene
SwissProt Q09562 EMBL-EBI
WormBase CE01949 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK20066 Hypothetical protein F47D12.5 [Caenorhabditis elegans] ref|NP_498378.1| F47D12.5 [Caenorhabditis elegans] sp|Q09562|YR45_CAEEL Hypothetical protein F47D12.5 in chromosome III 0.0
blast CAA92801 Hypothetical protein C33A12.12 [Caenorhabditis elegans] emb|CAA22147.1| Hypothetical protein C33A12.12 [Caenorhabditis elegans] ref|NP_501674.1| C33A12.12 [Caenorhabditis elegans] emb|CAB16465.1| C33A12.12 [Caenorhabditis elegans] 3.0E-62
blast AAA82410 Hypothetical protein W06A11.2 [Caenorhabditis elegans] ref|NP_494716.1| W06A11.2 [Caenorhabditis elegans] 2.0E-49
blast CAA92801 Hypothetical protein C33A12.12 [Caenorhabditis elegans] emb|CAA22147.1| Hypothetical protein C33A12.12 [Caenorhabditis elegans] ref|NP_501674.1| C33A12.12 [Caenorhabditis elegans] emb|CAB16465.1| C33A12.12 [Caenorhabditis elegans] 6.0E-48
blast AAA82410 Hypothetical protein W06A11.2 [Caenorhabditis elegans] ref|NP_494716.1| W06A11.2 [Caenorhabditis elegans] 9.0E-45
Sequence
Target Sequence 
>C. ELEGANS:187677_AT
ctaaccaaagcgtcggatcacctgaaaattctcaaaatattgaaaaatgttctactcgag
ctcactgataaaaatgtgaaacatgttgcaatcgacgcgaggatttccgttttgcaagaa
agacttgacgaatgggatgatgaaagagcatattatgtcttcacagttcttgcattaatt
atctccaattttccaacaattgtcaacagagaaccggcgaattctttaatacgagaatgt
tttccagaaatatcaaacgtcattaaaattcctgtttccgattcgaagatttacgtgaaa
aatggaattctcaagaaaattctaaaggattctagagaagatggatccttactttgggct
cttctggtgatcaaaagctcaatggaacaggataaaagctttgtaaatttacttaccacc
gagatgtccaacctcaacactaattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAACCAAAGCGTCGGATCACCTGA 59 225 1423 Antisense
ATGTTCTACTCGAGCTCACTGATAA 473 47 1469 Antisense
GAAACATGTTGCAATCGACGCGAGG 9 357 1500 Antisense
TCGACGCGAGGATTTCCGTTTTGCA 310 601 1514 Antisense
ATTATGTCTTCACAGTTCTTGCATT 342 13 1574 Antisense
GAACCGGCGAATTCTTTAATACGAG 122 345 1633 Antisense
AAATTCCTGTTTCCGATTCGAAGAT 486 113 1688 Antisense
GAAGATGGATCCTTACTTTGGGCTC 277 337 1759 Antisense
TACTTTGGGCTCTTCTGGTGATCAA 620 643 1772 Antisense
TTACTTACCACCGAGATGTCCAACC 516 681 1831 Antisense
GATGTCCAACCTCAACACTAATTCT 703 405 1845 Antisense
Sequence Source Affymetrix Proprietary Database