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[187676_at]

Description C34E10.9 /REP_DB=WormBase Gene ID /WP=CE01189 /TR=SW:P46583 /GB=AAA19071.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 7.2
(-3)
A 		14.7
(-1.6)
A 		9.2
(-2.6)
A 		40.4
(3)
A 		33
B 40.5
(3)
A 		3.9
(-3)
A 		5.9
(-2.7)
A 		3.8
(-3)
A 		37
C 4.6
(-3)
A 		8.8
(-2.7)
A 		6
(-2.9)
A 		81.8
(3)
A 		77
avr 17.4
(-1.2) 		9.1
(-2.6) 		7
(-3) 		42
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 6.3
(-3)
A 		31.4
(0.6)
A 		43.8
(2.4)
A 		13.9
(-1.9)
A 		44.1
(2.5)
A 		47.6
(3)
A 		41
B 3.2
(-3)
A 		20.7
(0.4)
A 		18.7
(-0)
A 		3.3
(-3)
A 		30.5
(2.3)
A 		34.2
(3)
A 		31
C 16.3
(-1.7)
A 		37.5
(0.4)
A 		5
(-2.9)
A 		3.6
(-3)
A 		44.3
(1.1)
A 		63.1
(3)
A 		60
avr 8.6
(-2.8) 		29.9
(0.3) 		22.5
(-0.7) 		6.9
(-3) 		39.6
(1.7) 		48.3
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.6
(-2.7)
A 		3.2
(-1.6)
A 		2.4
(-3)
A 		5.9
(3)
A 		4
B 12.9
(3)
A 		1
(-2.9)
A 		1.4
(-2.7)
A 		0.8
(-3)
A 		12
C 1.5
(-3)
A 		2.5
(-2.5)
A 		2.1
(-2.7)
A 		13.8
(3)
A 		12
avr 5.7
(1.6) 		2.2
(-2.8) 		2
(-3) 		6.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.2
(-3)
A 		11.2
(2)
A 		9.5
(1.1)
A 		3.5
(-1.9)
A 		13.3
(3)
A 		11.6
(2.2)
A 		12
B 1.1
(-2.9)
A 		6.9
(0)
A 		4.5
(-1.2)
A 		0.9
(-3)
A 		12.4
(2.8)
A 		12.8
(3)
A 		12
C 6.1
(-1.4)
A 		11.4
(0.1)
A 		1.3
(-2.8)
A 		0.7
(-3)
A 		14.3
(1)
A 		21.1
(3)
A 		20
avr 2.8
(-2.5) 		9.8
(0.6) 		5.1
(-1.5) 		1.7
(-3) 		13.3
(2.2) 		15.2
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187676_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6703
Sequence Type Exemplar sequence
Representative Public ID C34E10.9 NCBI
Target Description C34E10.9 /REP_DB=WormBase Gene ID /WP=CE01189 /TR=SW:P46583 /GB=AAA19071.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065719(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065719 NCBI Caenorhabditis elegans C34E10.9 (C34E10.9) mRNA, complete cds. 11/11 None
SNAP00000034361 ENSEMBL cdna:SNAP chromosome:CEL140:III:5262671:5263290:-1 10/11 None
C34E10.9 ENSEMBL cdna:known chromosome:CEL140:III:5262671:5263290:-1 gene:C34E10.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034365 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5262669-5263289(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34E10.9
Entrez Gene 183213 Entrez gene
SwissProt P46583 EMBL-EBI
WormBase CE01189 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA19071 Hypothetical protein C34E10.9 [Caenorhabditis elegans] ref|NP_498120.1| C34E10.9 [Caenorhabditis elegans] sp|P46583|YLB9_CAEEL Hypothetical protein C34E10.9 in chromosome III 4.0E-65
blast AAA19071 Hypothetical protein C34E10.9 [Caenorhabditis elegans] ref|NP_498120.1| C34E10.9 [Caenorhabditis elegans] sp|P46583|YLB9_CAEEL Hypothetical protein C34E10.9 in chromosome III 7.0E-63
blast CAE73671 Hypothetical protein CBG21180 [Caenorhabditis briggsae] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:187676_AT
atgagtacaggaacgcccacaactcaaaaagtggtgaagacatccattcgtcttggaccc
gtgaatcctccgacgccaactagaaacacacaaggcggacacggattttctgcagagttc
ttggaatatagaagaagacgtcaagagagacacaccgtccgtctggctaaactaccgaac
gagactttaattattggaggagccaatccattcgacgctagaaacgtaccagaagccatc
aaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGTACAGGAACGCCCACAACTC 525 45 13 Antisense
CAGGAACGCCCACAACTCAAAAAGT 589 183 20 Antisense
GAAGACATCCATTCGTCTTGGACCC 66 341 48 Antisense
CTCCGACGCCAACTAGAAACACACA 539 233 80 Antisense
AGAAACACACAAGGCGGACACGGAT 297 71 94 Antisense
CAAGGCGGACACGGATTTTCTGCAG 632 183 103 Antisense
GGATTTTCTGCAGAGTTCTTGGAAT 414 509 115 Antisense
GTCCGTCTGGCTAAACTACCGAACG 689 473 169 Antisense
CTACCGAACGAGACTTTAATTATTG 617 223 184 Antisense
GAGCCAATCCATTCGACGCTAGAAA 375 385 212 Antisense
GAAACGTACCAGAAGCCATCAAAAA 58 357 233 Antisense
Sequence Source Affymetrix Proprietary Database