[Home] | [Total List]

[187675_s_at]

Description C06G3.10 /REP_DB=WormBase Gene ID /WP=CE07986 /TR=SW:Q21444 /GB=AAB03139.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 29      4grp_high_8_8 > 03      6grp_highest_nonorm > 84      6grp_total > 87      4grp_total > 06      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 500.6
(-0.6)
P 		380.8
(-3)
P 		461.9
(-1.3)
P 		674.7
(3)
P 		294
B 559.9
(3)
P 		508.1
(-1.4)
P 		503.4
(-1.8)
P 		489.1
(-3)
P 		71
C 543.1
(-0.7)
P 		475.2
(-3)
P 		573.6
(0.4)
P 		651
(3)
P 		176
avr 534.5
(0.2) 		454.7
(-3) 		513
(-0.7) 		604.9
(3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 500
1 2 3 4 5 6 range
A 589.5
(-1.7)
P 		495.5
(-3)
P 		521.8
(-2.6)
P 		738.8
(0.5)
P 		668
(-0.5)
P 		917.9
(3)
P 		422
B 551.6
(-0.2)
P 		417.9
(-3)
P 		564.6
(0)
P 		554.1
(-0.2)
P 		610.4
(1)
P 		709.1
(3)
P 		291
C 610.9
(-1)
P 		504.9
(-3)
P 		628.5
(-0.7)
P 		573.8
(-1.7)
P 		662.5
(-0.1)
P 		827.6
(3)
P 		323
avr 584
(-1.1) 		472.8
(-3) 		571.6
(-1.3) 		622.2
(-0.4) 		647
(0) 		818.2
(3) 		345
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 182.3
(3)
P 		82.7
(-3)
P 		120.8
(-0.7)
P 		98.8
(-2)
P 		100
B 178.5
(3)
P 		125.5
(-1.3)
P 		116.6
(-2)
P 		104.2
(-3)
P 		74
C 179.8
(1.7)
P 		136.6
(-1.2)
P 		199.9
(3)
P 		109.8
(-3)
P 		90
avr 180.2
(3) 		114.9
(-2.2) 		145.8
(0.3) 		104.3
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 108.7
(-3)
P 		176.2
(0.5)
P 		113.6
(-2.7)
P 		187.4
(1.1)
P 		201.6
(1.9)
P 		223.5
(3)
P 		115
B 191.9
(-0.4)
P 		139.1
(-2.9)
P 		137.1
(-3)
P 		146.7
(-2.5)
P 		248
(2.2)
P 		264.4
(3)
P 		127
C 226.4
(1.1)
P 		154.1
(-1.6)
P 		160
(-1.3)
P 		115.4
(-3)
P 		214.4
(0.7)
P 		277
(3)
P 		162
avr 175.7
(-1) 		156.5
(-2) 		136.9
(-3) 		149.8
(-2.3) 		221.3
(1.3) 		255
(3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187675_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10109
Sequence Type Exemplar sequence
Representative Public ID C06G3.10 NCBI
Target Description C06G3.10 /REP_DB=WormBase Gene ID /WP=CE07986 /TR=SW:Q21444 /GB=AAB03139.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068691(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068691 NCBI Caenorhabditis elegans Component of GOlgi (homolog of human COG) family member (cgo-2) (cgo-2) mRNA, complete cds. 11/11 A 
SNAP00000008741 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7037067:7039531:-1 11/11 None
GENEFINDER00000008752 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7037067:7039849:-1 11/11 None
C06G3.10 ENSEMBL cdna:known chromosome:CEL140:IV:7036942:7039563:-1 gene:C06G3.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7037072-7039537(-) 99.9 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cgo-2
Ensembl C06G3.10
Entrez Gene 177473 Entrez gene
SwissProt Q21444 EMBL-EBI
WormBase CE28817 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254087_AT expressed protein at
CANINE:1604625_AT similar to Conserved oligomeric Golgi complex component 2 (Low density lipoprotein receptor defect C-complementing protein) cfa
CANINE:1598093_AT similar to Conserved oligomeric Golgi complex component 2 (Low density lipoprotein receptor defect C-complementing protein) cfa
CANINE_2:CFA.17409.1.S1_S_AT similar to Conserved oligomeric Golgi complex component 2 (Low density lipoprotein receptor defect C-complementing protein) cfa
CANINE_2:CFAAFFX.18781.1.S1_AT similar to Conserved oligomeric Golgi complex component 2 (Low density lipoprotein receptor defect C-complementing protein) cfa
DROSOPHILA_2:1633420_AT ldlCp-related protein dm
DROSGENOME1:144152_AT ldlCp-related protein dm
CHICKEN:GGAAFFX.7045.1.S1_AT similar to Conserved oligomeric Golgi complex component 2 (Low density lipoprotein receptor defect C-complementing protein) gga
HG-U133A:203073_AT component of oligomeric golgi complex 2 hs
HG-U133_PLUS_2:203073_AT component of oligomeric golgi complex 2 hs
HG-FOCUS:203073_AT component of oligomeric golgi complex 2 hs
HG-U133A_2:203073_AT component of oligomeric golgi complex 2 hs
HUGENEFL:Z34975_AT component of oligomeric golgi complex 2 hs
U133_X3P:G6678675_3P_AT component of oligomeric golgi complex 2 hs
HG-U95AV2:38390_AT component of oligomeric golgi complex 2 hs
HU35KSUBC:RC_N58542_AT Component of oligomeric golgi complex 2 hs
U133_X3P:HS.39194.0.A1_3P_AT Component of oligomeric golgi complex 2 hs
U133_X3P:HS.226925.0.A1_3P_AT Component of oligomeric golgi complex 2 hs
HG-U133_PLUS_2:237433_AT Component of oligomeric golgi complex 2 hs
HG-U133B:237433_AT Component of oligomeric golgi complex 2 hs
HG-U133_PLUS_2:243608_AT Component of oligomeric golgi complex 2 hs
HG-U133B:243608_AT Component of oligomeric golgi complex 2 hs
HG-U95C:52582_AT Component of oligomeric golgi complex 2 hs
HG-U95E:87574_AT Component of oligomeric golgi complex 2 hs
HG-U95B:55350_AT Component of oligomeric golgi complex 2 hs
HU35KSUBB:RC_AA016245_AT Component of oligomeric golgi complex 2 hs
MG-U74BV2:114705_AT component of oligomeric golgi complex 2 mm
MOE430A:1416932_AT component of oligomeric golgi complex 2 mm
MOUSE430A_2:1416932_AT component of oligomeric golgi complex 2 mm
MOUSE430_2:1416932_AT component of oligomeric golgi complex 2 mm
MU19KSUBB:TC28727_AT Component of oligomeric golgi complex 2 (Cog2), mRNA mm
Protein Similarities
Method ID Description E-Value
blast AAB03139 Component of golgi (homolog of human cog) protein 2 [Caenorhabditis elegans] ref|NP_501092.1| Component of GOlgi (homolog of human COG) family member (cgo-2) [Caenorhabditis elegans] sp|Q21444|COG2_CAEEL Conserved oligomeric Golgi complex component 2 (LDLC protein homolog) emb|CAA84428.1| Cog2 protein [Caenorhabditis elegans] 0.0
blast T30098 hypothetical protein C06G3.10 - Caenorhabditis elegans 0.0
blast CAE57451 Hypothetical protein CBG00414 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009316 EMBL-EBI COG complex component, COG2 1.0E-126
Pfam IPR009316 EMBL-EBI COG complex component, COG2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187675_S_AT
tatcacagtggataccgctccattcggtcaatgcctaacaaagcatggtcgatcaattga
tagtctttgtgttcaaattgatgatagtattattgaaatgttctccgaagttcttcatca
agaaattgctcaagtttccgatgttcctaaacaatacagatggacgaagaaatcaccacc
gacaacgcattccaaatatgttgttacagctattgaaatggttgagaatttgaaagaaaa
actatgctgcgaagaacatcctcacaccgatgaaattgttcgaaaagttaatctttcagc
attcaattatttcgtggggaaagggaacgaggtgctggatagtgtcgaagctacaggatc
ttctttatcccgattcaaacggaaaaccacaactgattctggctccacggttactgatga
cgataaaatcaaacaacaaatctatcatgatgctaaatatttcctgagctatgcggaaaa
tcttgtattctcacaagctgatctcaccggattacaagaagtcgtcaatcgatttgacaa
agatgcacgttcggcgattgtacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCACAGTGGATACCGCTCCATTC 272 659 1413 Antisense
GCTCCATTCGGTCAATGCCTAACAA 622 297 1429 Antisense
GAAATGTTCTCCGAAGTTCTTCATC 683 361 1507 Antisense
ATTGCTCAAGTTTCCGATGTTCCTA 303 47 1537 Antisense
CGAAGAAATCACCACCGACAACGCA 615 253 1577 Antisense
TATGCTGCGAAGAACATCCTCACAC 428 657 1655 Antisense
GATCTTCTTTATCCCGATTCAAACG 637 417 1769 Antisense
CTGGCTCCACGGTTACTGATGACGA 388 241 1811 Antisense
GCTAAATATTTCCTGAGCTATGCGG 218 301 1864 Antisense
TCACAAGCTGATCTCACCGGATTAC 188 629 1903 Antisense
GATGCACGTTCGGCGATTGTACAAG 317 413 1954 Antisense
Sequence Source Affymetrix Proprietary Database