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[187674_at]

Description Y110A2AL.11 /REP_DB=WormBase Gene ID /WP=CE25187 /TR=Q9N494 /GB=AAF60406.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 33      4grp_high_8_8 > 12      6grp_total > 13      4grp_total > 12      6grp_high1_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 112.6
(-1.5)
P 		96.8
(-2.4)
A 		87.7
(-3)
P 		184.4
(3)
P 		97
B 130.7
(3)
P 		111.4
(0.6)
P 		82.8
(-3)
P 		123.7
(2.1)
P 		48
C 135.2
(-1)
P 		96.7
(-2.7)
P 		88.9
(-3)
P 		227.9
(3)
P 		139
avr 126.2
(-0.4) 		101.6
(-2) 		86.5
(-3) 		178.7
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 150.3
(3)
M 		111.9
(0.3)
P 		123.1
(1.1)
P 		64.2
(-3)
M 		112
(0.3)
A 		92.5
(-1)
P 		86
B 97.5
(1)
P 		80.1
(-1.3)
A 		113.5
(3)
P 		101.9
(1.5)
P 		100.8
(1.4)
P 		66.6
(-3)
P 		47
C 107.4
(-0.2)
P 		155.9
(2.5)
P 		87.6
(-1.3)
P 		164.1
(3)
A 		81.3
(-1.7)
P 		58.3
(-3)
P 		106
avr 118.4
(3) 		116
(2.7) 		108.1
(1.7) 		110.1
(1.9) 		98
(0.3) 		72.5
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 41
(3)
P 		21
(-3)
A 		22.9
(-2.4)
P 		27
(-1.2)
P 		20
B 41.7
(3)
P 		27.5
(-0.8)
P 		19.2
(-3)
P 		26.4
(-1.1)
P 		23
C 44.8
(3)
P 		27.8
(-3)
P 		31
(-1.9)
P 		38.4
(0.7)
P 		17
avr 42.5
(3) 		25.4
(-2.7) 		24.4
(-3) 		30.6
(-0.9) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 27.7
(-0.1)
M 		39.8
(3)
P 		26.8
(-0.3)
P 		16.3
(-3)
M 		33.8
(1.5)
A 		22.5
(-1.4)
P 		24
B 33.9
(0.4)
P 		26.7
(-2.3)
A 		27.6
(-2)
P 		27
(-2.2)
P 		41
(3)
P 		24.8
(-3)
P 		16
C 39.8
(1.3)
P 		47.6
(3)
P 		22.3
(-2.4)
P 		33
(-0.1)
A 		26.3
(-1.5)
P 		19.5
(-3)
P 		28
avr 33.8
(1.4) 		38
(3) 		25.6
(-1.7) 		25.4
(-1.8) 		33.7
(1.4) 		22.3
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187674_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4600
Sequence Type Exemplar sequence
Representative Public ID Y110A2AL.11 NCBI
Target Description Y110A2AL.11 /REP_DB=WormBase Gene ID /WP=CE25187 /TR=Q9N494 /GB=AAF60406.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027236(11), NM_001027237(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027236 NCBI Caenorhabditis elegans Y110A2AL.12a (Y110A2AL.12) mRNA, complete cds. 11/11 None
NM_001027237 NCBI Caenorhabditis elegans Y110A2AL.12b (Y110A2AL.12) mRNA, complete cds. 11/11 None
SNAP00000036291 ENSEMBL cdna:SNAP chromosome:CEL140:II:2878953:2889002:-1 11/11 None
Y110A2AL.12b ENSEMBL cdna:known chromosome:CEL140:II:2878953:2881925:-1 gene:Y110A2AL.12 11/11 None
Y110A2AL.12a ENSEMBL cdna:known chromosome:CEL140:II:2878953:2884893:-1 gene:Y110A2AL.12 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036305 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2878951-2881515(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y110A2AL.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60407 Hypothetical protein Y110A2AL.12a [Caenorhabditis elegans] ref|NP_001022407.1| Y110A2AL.12a [Caenorhabditis elegans] 0.0
blast AAF60407 Hypothetical protein Y110A2AL.12a [Caenorhabditis elegans] ref|NP_001022407.1| Y110A2AL.12a [Caenorhabditis elegans] 1.0E-154
blast AAF60406 Hypothetical protein Y110A2AL.12b [Caenorhabditis elegans] ref|NP_001022408.1| Y110A2AL.12b [Caenorhabditis elegans] 1.0E-126
blast AAF60407 Hypothetical protein Y110A2AL.12a [Caenorhabditis elegans] ref|NP_001022407.1| Y110A2AL.12a [Caenorhabditis elegans] 1.0E-125
blast AAF60406 Hypothetical protein Y110A2AL.12b [Caenorhabditis elegans] ref|NP_001022408.1| Y110A2AL.12b [Caenorhabditis elegans] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR009447 EMBL-EBI GWT1 2.2E-82
Pfam IPR009447 EMBL-EBI GWT1 2.2E-82
Pfam IPR000297 EMBL-EBI PpiC-type peptidyl-prolyl cis-trans isomerase 7.0E-33
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 1.5E-12
Pfam IPR009447 EMBL-EBI GWT1 2.2E-82
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022407.1 9 27-49,61-83,87-109,142-164,174-193,214-236,312-334,347-364,379-398
NP_001022408.1 4 13-32,52-74,94-111,126-145
Y110A2AL.12b 4 13-32,52-74,94-111,126-145
Y110A2AL.12a 9 27-49,61-83,87-109,142-164,174-193,214-236,312-334,347-364,379-398
SNAP00000036291 6 182-204,219-238,269-291,311-333,353-370,385-404
Sequence
Target Sequence 
>C. ELEGANS:187674_AT
gatccttgacgagtcggcgaatcgccgcgagaatctgatcaccgccaacgcggagggtct
gacgtcactcatgggatatttgacgatattctacgcgagtttggccatcggagagtttat
ggcgaagactagcatccgcatcaaatcgtggatccgccgatgcttccagctcttcgcact
ctcgctgatcctattttttattcaaattgccgccgaaaaatgcgttgacccaccgtgtcg
acgtgtggttaatgccacgtatatcttttcacagttaaccctcatgaccttcgccaccgg
agtctgcctatcaatccaaatgttcaatacagtcgcctggtgttccagtttcccgcagtt
ctcaaatggcgaagatccgtattccgtggtgtctccgtgtctttctgattctataaatcg
ccactcactgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCTTGACGAGTCGGCGAATCGC 679 415 132 Antisense
TCGCCGCGAGAATCTGATCACCGCC 499 599 153 Antisense
GATATTCTACGCGAGTTTGGCCATC 581 425 216 Antisense
GACTAGCATCCGCATCAAATCGTGG 541 371 258 Antisense
GACCCACCGTGTCGACGTGTGGTTA 427 381 358 Antisense
ATGCCACGTATATCTTTTCACAGTT 285 41 383 Antisense
TTTCACAGTTAACCCTCATGACCTT 281 671 398 Antisense
GAGTCTGCCTATCAATCCAAATGTT 20 401 431 Antisense
TCAATACAGTCGCCTGGTGTTCCAG 212 633 455 Antisense
GTTTCCCGCAGTTCTCAAATGGCGA 78 451 479 Antisense
TTCTATAAATCGCCACTCACTGCTC 490 691 540 Antisense
Sequence Source Affymetrix Proprietary Database