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[187672_s_at]

Description Y46G5A.27 /REP_DB=WormBase Gene ID /WP=CE21976 /TR=SW:P41991 /GB=CAB60370.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 1.4
(-3)
A 		2.3
(-2.8)
A 		7.5
(-1.5)
A 		26.4
(3)
A 		25
B 2.2
(-3)
A 		5.8
(-2.6)
A 		4
(-2.8)
A 		63.5
(3)
A 		61
C 1.8
(-2.9)
A 		4.6
(-2.7)
A 		1.1
(-3)
A 		61.5
(3)
A 		60
avr 1.8
(-3) 		4.2
(-2.7) 		4.2
(-2.7) 		50.5
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 5.1
(-2.8)
A 		1.9
(-3)
A 		5.7
(-2.7)
A 		16.9
(-1.9)
A 		6.3
(-2.7)
A 		87.4
(3)
A 		86
B 24.8
(-1.9)
A 		9.2
(-2.7)
A 		2.1
(-3)
A 		1.7
(-3)
A 		35.6
(-1.4)
A 		131.3
(3)
P 		130
C 6.6
(-2.7)
A 		1.2
(-3)
A 		7.9
(-2.6)
A 		16.6
(-2)
A 		7.1
(-2.6)
A 		94.8
(3)
A 		94
avr 12.2
(-2.5) 		4.1
(-3) 		5.2
(-2.9) 		11.7
(-2.5) 		16.3
(-2.3) 		104.5
(3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.5
(-3)
A 		0.5
(-3)
A 		1.9
(-0.5)
A 		3.9
(3)
A 		3
B 0.7
(-3)
A 		1.4
(-2.7)
A 		0.9
(-2.9)
A 		13.5
(3)
A 		13
C 0.6
(-2.9)
A 		1.3
(-2.5)
A 		0.4
(-3)
A 		10.4
(3)
A 		10
avr 0.6
(-3) 		1.1
(-2.7) 		1.1
(-2.7) 		9.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 0.9
(-2.9)
A 		0.7
(-3)
A 		1.2
(-2.9)
A 		4.3
(-2)
A 		1.9
(-2.7)
A 		21.3
(3)
A 		21
B 8.6
(-2)
A 		3.1
(-2.7)
A 		0.5
(-3)
A 		0.5
(-3)
A 		14.5
(-1.3)
A 		49
(3)
P 		49
C 2.5
(-2.6)
A 		0.4
(-3)
A 		2
(-2.7)
A 		3.3
(-2.4)
A 		2.3
(-2.6)
A 		31.7
(3)
A 		31
avr 4
(-2.5) 		1.4
(-3) 		1.2
(-3) 		2.7
(-2.7) 		6.2
(-2.1) 		34
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187672_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2880
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.27 NCBI
Target Description Y46G5A.27 /REP_DB=WormBase Gene ID /WP=CE21976 /TR=SW:P41991 /GB=CAB60370.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064331(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064331 NCBI Caenorhabditis elegans Patterned Expression Site family member (pes-10) (pes-10) mRNA, complete cds. 11/11 None
SNAP00000039009 ENSEMBL cdna:SNAP chromosome:CEL140:II:12846298:12847711:-1 11/11 None
GENEFINDER00000039049 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12846298:12847711:-1 11/11 None
Y46G5A.27 ENSEMBL cdna:known chromosome:CEL140:II:12846100:12847732:-1 gene:Y46G5A.27 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12846294-12847708(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pes-10
Ensembl Y46G5A.27
Entrez Gene 174920 Entrez gene
SwissProt P41991 EMBL-EBI
WormBase CE21976 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60370 Hypothetical protein Y46G5A.27 [Caenorhabditis elegans] ref|NP_496732.1| Patterned Expression Site family member (pes-10) [Caenorhabditis elegans] sp|P41991|PES10_CAEEL Protein pes-10 gb|AAA50369.1| PES-10 0.0
blast CAB60371 Hypothetical protein Y46G5A.28 [Caenorhabditis elegans] ref|NP_496733.1| Y46G5A.28 [Caenorhabditis elegans] 1.0E-120
blast CAB03926 Hypothetical protein C27C7.7 [Caenorhabditis elegans] ref|NP_492917.1| C27C7.7 [Caenorhabditis elegans] 3.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR009819 EMBL-EBI Pes-10 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187672_S_AT
gcacaggatcaagcactggtctctgaaatctgcatggtgttccttgcaggatgtattaaa
tcaggaagaagtgatgtgatctctgcagcaattcaattcactggagcattcttctatcca
ttggcattgcttcgaaagtatgatatccaatacttgatctactgctatggaagtcataac
gaggatgccgaacttctgatgaatcatatcaagcatcttcaagccatagaaatcgctgga
gagcgacaagagttcttcaaaatgttcatggaaacaacttttcgcaatgccgaaacagtc
accgattctgtgatggctcaaatgaaaggatttctggaagatggcgatgatttcatgatt
tcctgcacattgcatgtcttccttaaaatgccaattacactcagccaattcaagaatagc
cacgtggaagcctgcctagaaaatcttgaatcaggacttgctgcacaacttggtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAGGATCAAGCACTGGTCTCTG 70 317 706 Antisense
AGTGATGTGATCTCTGCAGCAATTC 571 59 775 Antisense
CAATTCACTGGAGCATTCTTCTATC 167 181 799 Antisense
TCTTCTATCCATTGGCATTGCTTCG 485 617 815 Antisense
ATCCAATACTTGATCTACTGCTATG 319 41 850 Antisense
TAACGAGGATGCCGAACTTCTGATG 264 637 882 Antisense
GCAATGCCGAAACAGTCACCGATTC 161 321 989 Antisense
GATTTCATGATTTCCTGCACATTGC 29 429 1054 Antisense
GCACATTGCATGTCTTCCTTAAAAT 231 317 1070 Antisense
AAAATGCCAATTACACTCAGCCAAT 366 133 1090 Antisense
AGGACTTGCTGCACAACTTGGTTTT 362 55 1158 Antisense
Sequence Source Affymetrix Proprietary Database