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[187670_at]

Description C05D11.8 /REP_DB=WormBase Gene ID /WP=CE01138 /TR=SW:Q11187 /GB=AAB53828.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 7.1
(-3)
A 		47.6
(3)
A 		33.4
(0.9)
A 		47.2
(2.9)
A 		41
B 32.7
(0.2)
A 		7.1
(-2.7)
A 		4.9
(-3)
A 		57.2
(3)
A 		52
C 9.5
(-2.7)
A 		4.7
(-3)
A 		8.1
(-2.8)
A 		96.8
(3)
A 		92
avr 16.4
(-2.9) 		19.8
(-2.5) 		15.5
(-3) 		67.1
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 13.7
(3)
A 		7.3
(-2.2)
A 		9
(-0.8)
A 		11
(0.8)
A 		11.1
(0.9)
A 		6.3
(-3)
A 		7
B 6.7
(-2.6)
A 		5.6
(-2.7)
A 		70.2
(3)
A 		11.6
(-2.2)
A 		2.3
(-3)
A 		9.5
(-2.4)
A 		68
C 3.8
(-3)
A 		29.3
(0.4)
A 		7.3
(-2.5)
A 		48.4
(3)
A 		5.8
(-2.7)
A 		6
(-2.7)
A 		45
avr 8.1
(-2.5) 		14.1
(-0.9) 		28.8
(3) 		23.7
(1.6) 		6.4
(-3) 		7.3
(-2.8) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.6
(-3)
A 		10.3
(3)
A 		8.7
(1.8)
A 		6.9
(0.4)
A 		8
B 10.4
(2)
A 		1.8
(-2.6)
A 		1.1
(-3)
A 		12.2
(3)
A 		11
C 3.1
(-2.3)
A 		1.3
(-3)
A 		2.8
(-2.4)
A 		16.3
(3)
A 		15
avr 5.4
(-2.1) 		4.5
(-2.8) 		4.2
(-3) 		11.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.5
(0.3)
A 		2.6
(0.7)
A 		2
(-1.3)
A 		2.8
(1.3)
A 		3.3
(3)
A 		1.5
(-3)
A 		2
B 2.3
(-2.5)
A 		1.8
(-2.7)
A 		17.1
(3)
A 		3.1
(-2.2)
A 		0.9
(-3)
A 		3.5
(-2)
A 		16
C 1.4
(-3)
A 		8.9
(2.4)
A 		1.9
(-2.6)
A 		9.7
(3)
A 		1.9
(-2.6)
A 		2
(-2.6)
A 		8
avr 2.1
(-2.9) 		4.4
(-0.1) 		7
(3) 		5.2
(0.8) 		2
(-3) 		2.3
(-2.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6990
Sequence Type Exemplar sequence
Representative Public ID C05D11.8 NCBI
Target Description C05D11.8 /REP_DB=WormBase Gene ID /WP=CE01138 /TR=SW:Q11187 /GB=AAB53828.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066006(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066006 NCBI Caenorhabditis elegans C05D11.8 (C05D11.8) mRNA, complete cds. 11/11 None
GENEFINDER00000019468 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6422395:6427359:-1 11/11 None
SNAP00000019452 ENSEMBL cdna:SNAP chromosome:CEL140:III:6423224:6427359:-1 9/11 None
C05D11.8 ENSEMBL cdna:known chromosome:CEL140:III:6422395:6427241:-1 gene:C05D11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6422393-6427240(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D11.8
Entrez Gene 182260 Entrez gene
SwissProt Q11187 EMBL-EBI
WormBase CE01138 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53828 Hypothetical protein C05D11.8 [Caenorhabditis elegans] ref|NP_498407.1| C05D11.8 [Caenorhabditis elegans] sp|Q11187|YPD8_CAEEL Hypothetical protein C05D11.8 in chromosome III 0.0
blast CAE72488 Hypothetical protein CBG19667 [Caenorhabditis briggsae] 0.0
blast XP_422921 PREDICTED: similar to DKFZP566M1046 protein, partial [Gallus gallus] 9.0E-54
Sequence
Target Sequence 
>C. ELEGANS:187670_AT
ggattctcaatctacaatttccctgaaagatcgaagcttcttcaaacaatactggaaggt
gtcgagacattatgtgaaaatgagcttcctttcaacacggaactattctcattaattgct
gatttggctacttatccacaacctcttttagcatattatctatttgatccaaaggaggat
agttctgaaaaacatttgcttacgattctgcaaggagttcagacaagaattgatgtaatg
gctgaaggaatcgaatcatttgagatttggattgaaagaggtttcgagactttgaaagcg
agagcctgccgaataaaacaacaatcaacagcttcatcaccacgaacttctgacgatcac
gatccaacattgttctatggaagaagcacgatggcaccgccaggcagaaagcctctacta
cgtgaaccttcccgtcaagaaaccctagacgaccagacagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCTCAATCTACAATTTCCCTG 673 507 2086 Antisense
CGAAGCTTCTTCAAACAATACTGGA 609 253 2117 Antisense
GATTTGGCTACTTATCCACAACCTC 497 427 2206 Antisense
ATCCACAACCTCTTTTAGCATATTA 246 39 2219 Antisense
GACTTTGAAAGCGAGAGCCTGCCGA 483 371 2373 Antisense
ATCACCACGAACTTCTGACGATCAC 256 29 2421 Antisense
GACGATCACGATCCAACATTGTTCT 215 379 2437 Antisense
ATGGAAGAAGCACGATGGCACCGCC 224 53 2462 Antisense
ATGGCACCGCCAGGCAGAAAGCCTC 658 51 2476 Antisense
AGAAAGCCTCTACTACGTGAACCTT 616 69 2491 Antisense
AAGAAACCCTAGACGACCAGACAGC 212 153 2522 Antisense
Sequence Source Affymetrix Proprietary Database