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[187668_at]

Description F47D12.6 /REP_DB=WormBase Gene ID /WP=CE01950 /TR=SW:Q09391 /GB=AAK20067.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 42      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 33      6grp_total > 30      4grp_total > 51      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1320
1 2 3 4 range
A 858.6
(-1.3)
P 		1737.6
(3)
P 		1271.3
(0.7)
P 		524.7
(-3)
P 		1213
B 1128.9
(0.5)
P 		1504.4
(3)
P 		1253.1
(1.3)
P 		591.1
(-3)
P 		913
C 1169.6
(-0.6)
P 		1844.5
(3)
P 		1675
(2.1)
P 		718.3
(-3)
P 		1126
avr 1052.4
(-0.6) 		1695.5
(3) 		1399.8
(1.4) 		611.4
(-3) 		1084

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1740
1 2 3 4 5 6 range
A 1413.5
(-1)
P 		2066.3
(1.6)
P 		2414.2
(3)
P 		1683.1
(0.1)
P 		1134.3
(-2.1)
P 		914.8
(-3)
P 		1499
B 1218.2
(-1.6)
P 		2395.5
(2.4)
P 		2556.4
(3)
P 		1660.6
(-0.1)
P 		1140.6
(-1.9)
P 		816.1
(-3)
P 		1740
C 1492.6
(-0.2)
P 		2031.2
(2.2)
P 		1978.6
(2)
P 		2201.5
(3)
P 		1057.5
(-2.2)
P 		876.3
(-3)
P 		1325
avr 1374.8
(-0.9) 		2164.3
(2.4) 		2316.4
(3) 		1848.4
(1.1) 		1110.8
(-2) 		869.1
(-3) 		1447
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 507
1 2 3 4 range
A 312.6
(1.7)
P 		377.2
(3)
P 		332.3
(2.1)
P 		76.8
(-3)
P 		300
B 360
(2.7)
P 		371.5
(3)
P 		290.4
(1)
P 		126
(-3)
P 		246
C 387.2
(0.5)
P 		530.3
(2.3)
P 		583.8
(3)
P 		121.1
(-3)
P 		463
avr 353.3
(1.6) 		426.3
(3) 		402.2
(2.5) 		108
(-3) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 575
1 2 3 4 5 6 range
A 260.6
(-2.6)
P 		734.9
(3)
P 		525.8
(0.6)
P 		426.9
(-0.6)
P 		342.3
(-1.6)
P 		222.7
(-3)
P 		512
B 423.9
(-1.5)
P 		797.4
(3)
P 		620.8
(0.9)
P 		439.8
(-1.4)
P 		463.4
(-1.1)
P 		304.3
(-3)
P 		493
C 553.2
(1.8)
P 		619.8
(3)
P 		503.6
(0.9)
P 		442.7
(-0.3)
P 		342.2
(-2.1)
P 		293.3
(-3)
P 		327
avr 412.6
(-1.1) 		717.4
(3) 		550.1
(0.7) 		436.5
(-0.8) 		382.6
(-1.5) 		273.4
(-3) 		444
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187668_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7841
Sequence Type Exemplar sequence
Representative Public ID F47D12.6 NCBI
Target Description F47D12.6 /REP_DB=WormBase Gene ID /WP=CE01950 /TR=SW:Q09391 /GB=AAK20067.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065978(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065978 NCBI Caenorhabditis elegans F47D12.6 (F47D12.6) mRNA, complete cds. 11/11 None
F47D12.6 ENSEMBL cdna:known chromosome:CEL140:III:6286602:6287233:-1 gene:F47D12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6286637-6287185(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47D12.6
Entrez Gene 185934 Entrez gene
SwissProt Q09391 EMBL-EBI
WormBase CE01950 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK20067 Hypothetical protein F47D12.6 [Caenorhabditis elegans] ref|NP_498379.1| F47D12.6 [Caenorhabditis elegans] sp|Q09391|YR46_CAEEL Hypothetical protein F47D12.6 in chromosome III 9.0E-38
blast CAE70726 Hypothetical protein CBG17470 [Caenorhabditis briggsae] 1.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498379.1 1 25-47
F47D12.6 1 25-47
Sequence
Target Sequence 
>C. ELEGANS:187668_AT
atatccagacgtttttcgaccaatatgtacatcttccaagtgaaatatcgagcaaacacg
accatgcctacatcattctgatcctcctttcggttattttgattctccttcttcttatct
gtaatctctgtatatgctacttcatcaggcaacgaaggcgtcgagagttaatcgactatc
catccaacacattacaatatatcccatttcctcggaacgttcgaaaaccgtaccgaaccg
aatcgggaacctcatcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCCAGACGTTTTTCGACCAATA 270 21 20 Antisense
TCGACCAATATGTACATCTTCCAAG 660 601 35 Antisense
ATCGAGCAAACACGACCATGCCTAC 383 35 66 Antisense
ACCATGCCTACATCATTCTGATCCT 243 87 80 Antisense
TCCTTCTTCTTATCTGTAATCTCTG 359 591 125 Antisense
ATCTCTGTATATGCTACTTCATCAG 233 33 143 Antisense
TCATCAGGCAACGAAGGCGTCGAGA 562 619 161 Antisense
GAGAGTTAATCGACTATCCATCCAA 690 395 182 Antisense
GACTATCCATCCAACACATTACAAT 38 373 193 Antisense
AATATATCCCATTTCCTCGGAACGT 466 173 215 Antisense
GAACCGAATCGGGAACCTCATCTTC 396 343 254 Antisense
Sequence Source Affymetrix Proprietary Database