[Home] | [Total List]

[187665_at]

Description C30G12.4 /REP_DB=WormBase Gene ID /WP=CE01835 /TR=SW:Q09257 /GB=AAC46673.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 40.1
(-3)
A 		132.5
(2.6)
A 		119.7
(1.8)
A 		138.7
(3)
A 		99
B 53.1
(-3)
A 		218
(3)
A 		74.6
(-2.2)
A 		64.2
(-2.6)
A 		165
C 64.9
(-3)
A 		152.4
(3)
A 		135.9
(1.9)
A 		138.2
(2)
M 		88
avr 52.7
(-3) 		167.6
(3) 		110.1
(-0) 		113.7
(0.2) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 207
(3)
A 		110.9
(-0.8)
A 		120
(-0.4)
A 		126.3
(-0.2)
A 		100.2
(-1.2)
A 		54.1
(-3)
A 		153
B 129.1
(0.8)
A 		175.9
(3)
A 		46.3
(-3)
A 		127.5
(0.8)
A 		112
(0)
A 		73
(-1.8)
A 		130
C 109.3
(0.5)
A 		151.6
(3)
P 		96.4
(-0.3)
A 		132
(1.8)
A 		146.1
(2.7)
A 		51
(-3)
A 		101
avr 148.5
(3) 		146.1
(2.8) 		87.6
(-1.1) 		128.6
(1.7) 		119.4
(1) 		59.4
(-3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 14.6
(-3)
A 		28.8
(2.1)
A 		31.3
(3)
A 		20.3
(-1)
A 		17
B 16.9
(-2.5)
A 		53.8
(3)
A 		17.3
(-2.5)
A 		13.7
(-3)
A 		40
C 21.5
(-3)
A 		43.8
(2.2)
A 		47.4
(3)
A 		23.3
(-2.6)
M 		26
avr 17.7
(-3) 		42.1
(3) 		32
(0.5) 		19.1
(-2.7) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 38.2
(2.7)
A 		39.5
(3)
A 		26.1
(-0.1)
A 		32
(1.3)
A 		30.2
(0.9)
A 		13.2
(-3)
A 		26
B 44.9
(1.3)
A 		58.5
(3)
A 		11.2
(-3)
A 		33.8
(-0.1)
A 		45.5
(1.4)
A 		27.2
(-1)
A 		47
C 40.5
(1.6)
A 		46.3
(2.8)
P 		24.5
(-1.5)
A 		26.5
(-1.1)
A 		47.3
(3)
A 		17.1
(-3)
A 		30
avr 41.2
(1.6) 		48.1
(3) 		20.6
(-2.7) 		30.8
(-0.6) 		41
(1.5) 		19.2
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187665_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4095
Sequence Type Exemplar sequence
Representative Public ID C30G12.4 NCBI
Target Description C30G12.4 /REP_DB=WormBase Gene ID /WP=CE01835 /TR=SW:Q09257 /GB=AAC46673.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063116(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063116 NCBI Caenorhabditis elegans C30G12.4 (C30G12.4) mRNA, complete cds. 11/11 None
GENEFINDER00000038327 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7261579:7263409:1 11/11 None
C30G12.4 ENSEMBL cdna:known chromosome:CEL140:II:7261579:7263409:1 gene:C30G12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038318 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7261574-7263367(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30G12.4
Entrez Gene 183062 Entrez gene
SwissProt Q09257 EMBL-EBI
WormBase CE37485 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46673 Hypothetical protein C30G12.4 [Caenorhabditis elegans] ref|NP_495517.2| C30G12.4 [Caenorhabditis elegans] sp|Q09257|YQB4_CAEEL Hypothetical protein C30G12.4 in chromosome II 1.0E-118
blast CAE67585 Hypothetical protein CBG13119 [Caenorhabditis briggsae] 7.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 3.1E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495517.2 1 116-138
C30G12.4 1 116-138
GENEFINDER00000038327 1 116-138
Sequence
Target Sequence 
>C. ELEGANS:187665_AT
agacattgtttttctacgcgatctcgaacggaagagaggctcctcctccaattatccatt
ccttttcttcatcaaatttctccaaaaccagcttgtcctccctcttcactcaattcgcac
tcatttgaatgttgttcactgacattttcttacagttatatgatggtcagttgcaagctt
cttctttattatggaacattttctagtataatctctattgtactttcctgtgttgccact
agtccaacaggtacagtaaccacaactgtagctccaacaacaacgacggcggcaaccgga
tgcacgagttgtacagccagtcaggtaacatttgcccagtcaggtggaggtgttcagatt
gatactgcgggaattccgggaacagccgcaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACATTGTTTTTCTACGCGATCTC 22 73 181 Antisense
GAACGGAAGAGAGGCTCCTCCTCCA 314 349 206 Antisense
AATTTCTCCAAAACCAGCTTGTCCT 399 175 255 Antisense
CTTCACTCAATTCGCACTCATTTGA 517 221 284 Antisense
GATGGTCAGTTGCAAGCTTCTTCTT 89 409 342 Antisense
TCTATTGTACTTTCCTGTGTTGCCA 316 615 394 Antisense
GTAACCACAACTGTAGCTCCAACAA 421 461 436 Antisense
AACAACGACGGCGGCAACCGGATGC 454 53 459 Antisense
GGATGCACGAGTTGTACAGCCAGTC 650 511 478 Antisense
GCCAGTCAGGTAACATTTGCCCAGT 606 277 496 Antisense
GGAATTCCGGGAACAGCCGCAGGAT 162 531 550 Antisense
Sequence Source Affymetrix Proprietary Database