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[187664_s_at]

Description F11E6.1 /REP_DB=WormBase Gene ID /WP=CE20669 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XTB0 protein_id:CAB02924.1
Cluster 6grp_high1_10_10 > 51      4grp_high_8_8 > 32      6grp_total > 41      4grp_total > 47      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 529.2
(3)
P 		257
(-2.2)
P 		227.4
(-2.7)
P 		212.5
(-3)
A 		317
B 483.6
(3)
P 		220.8
(-2.2)
P 		183.1
(-3)
P 		190.7
(-2.8)
P 		301
C 472.5
(3)
P 		174.3
(-3)
P 		229.5
(-1.9)
P 		190.9
(-2.7)
A 		298
avr 495.1
(3) 		217.4
(-2.6) 		213.3
(-2.7) 		198
(-3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 269.8
(-0.8)
P 		299.9
(-0.2)
P 		454
(3)
P 		369.8
(1.2)
P 		274.3
(-0.7)
P 		166.4
(-3)
A 		288
B 316.8
(1.2)
P 		312.5
(1.1)
P 		339.3
(1.8)
P 		386.9
(3)
P 		242.5
(-0.6)
P 		148.8
(-3)
P 		238
C 274.3
(-0.5)
P 		345.5
(0.8)
P 		464.8
(3)
P 		333.4
(0.6)
P 		266.7
(-0.7)
P 		139.7
(-3)
P 		325
avr 287
(0) 		319.3
(0.8) 		419.4
(3) 		363.4
(1.7) 		261.2
(-0.5) 		151.6
(-3) 		268
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 192.7
(3)
P 		55.8
(-2.1)
P 		59.4
(-1.9)
P 		31.1
(-3)
A 		162
B 154.2
(3)
P 		54.5
(-2.3)
P 		42.4
(-2.9)
P 		40.6
(-3)
P 		114
C 156.4
(3)
P 		50.1
(-2.1)
P 		80
(-0.7)
P 		32.2
(-3)
A 		124
avr 167.8
(3) 		53.5
(-2.1) 		60.6
(-1.8) 		34.6
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 49.7
(-2.2)
P 		106.6
(3)
P 		98.9
(2.3)
P 		93.8
(1.8)
P 		82.8
(0.8)
P 		40.5
(-3)
A 		66
B 110.2
(3)
P 		104
(2.3)
P 		82.4
(-0)
P 		102.5
(2.2)
P 		98.5
(1.7)
P 		55.5
(-3)
P 		55
C 101.7
(1.6)
P 		105.4
(1.9)
P 		118.3
(3)
P 		67
(-1.3)
P 		86.3
(0.3)
P 		46.8
(-3)
P 		72
avr 87.2
(1.1) 		105.3
(3) 		99.9
(2.4) 		87.8
(1.2) 		89.2
(1.3) 		47.6
(-3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187664_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8470
Sequence Type Exemplar sequence
Representative Public ID F11E6.1 NCBI
Target Description F11E6.1 /REP_DB=WormBase Gene ID /WP=CE20669 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XTB0 protein_id:CAB02924.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070718(11), NM_070717(11), NM_171429(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070718 NCBI Caenorhabditis elegans F11E6.1a (F11E6.1) mRNA, complete cds. 11/11 A 
NM_070717 NCBI Caenorhabditis elegans F11E6.1b (F11E6.1) mRNA, complete cds. 11/11 None
NM_171429 NCBI Caenorhabditis elegans F11E6.1c (F11E6.1) mRNA, complete cds. 11/11 None
SNAP00000023040 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17478846:17479328:1 11/11 None
GENEFINDER00000023043 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17478846:17479328:1 11/11 None
F11E6.1a ENSEMBL cdna:known chromosome:CEL140:IV:17476578:17479328:1 gene:F11E6.1 11/11 A 
F11E6.1b ENSEMBL cdna:known chromosome:CEL140:IV:17476612:17479342:1 gene:F11E6.1 11/11 None
F11E6.1c ENSEMBL cdna:known chromosome:CEL140:IV:17476612:17479341:1 gene:F11E6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17476617-17479334(+) 100.0 100.0
Public Domain and Genome References
Ensembl F11E6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02924 Hypothetical protein F11E6.1a [Caenorhabditis elegans] emb|CAA20283.1| Hypothetical protein F11E6.1a [Caenorhabditis elegans] ref|NP_503119.1| F11E6.1a [Caenorhabditis elegans] 0.0
blast CAC35813 Hypothetical protein F11E6.1b [Caenorhabditis elegans] emb|CAC35807.1| Hypothetical protein F11E6.1b [Caenorhabditis elegans] ref|NP_503118.1| F11E6.1b [Caenorhabditis elegans] 0.0
blast CAE57468 Hypothetical protein CBG00434 [Caenorhabditis briggsae] 0.0
blast CAD42642 Hypothetical protein F11E6.1c [Caenorhabditis elegans] ref|NP_741501.1| F11E6.1c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001139 EMBL-EBI Glycoside hydrolase, family 30 1.0E-126
Pfam IPR001139 EMBL-EBI Glycoside hydrolase, family 30 1.0E-126
Pfam IPR001139 EMBL-EBI Glycoside hydrolase, family 30 8.2E-42
Sequence
Target Sequence 
>C. ELEGANS:187664_S_AT
tagtaaattccttccacgtggatctactcgtgtgttcacaaagatcgagggaaacctggc
tgtctcagctacaagtgttgtgattgaaggtggaagacgagctacagttattttatcaaa
agcgtccaactcattattgacacgtatagttgacagttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTAAATTCCTTCCACGTGGATCT 43 653 1350 Antisense
TCGTGTGTTCACAAAGATCGAGGGA 420 605 1377 Antisense
GATCGAGGGAAACCTGGCTGTCTCA 413 417 1392 Antisense
GAAACCTGGCTGTCTCAGCTACAAG 10 359 1400 Antisense
GGCTGTCTCAGCTACAAGTGTTGTG 114 541 1407 Antisense
GTCTCAGCTACAAGTGTTGTGATTG 693 469 1411 Antisense
GAAGGTGGAAGACGAGCTACAGTTA 491 331 1435 Antisense
GACGAGCTACAGTTATTTTATCAAA 485 379 1445 Antisense
ATTTTATCAAAAGCGTCCAACTCAT 24 13 1459 Antisense
AGCGTCCAACTCATTATTGACACGT 581 79 1470 Antisense
TATTGACACGTATAGTTGACAGTTC 44 661 1484 Antisense
Sequence Source Affymetrix Proprietary Database