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[187663_at]

Description F11E6.1 /REP_DB=WormBase Gene ID /WP=CE20669 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XTB0 protein_id:CAB02924.1
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      6grp_highest_nonorm > 71      6grp_total > 51      4grp_total > 54      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 451
1 2 3 4 range
A 419.8
(3)
P 		221.4
(-0.2)
P 		148.1
(-1.4)
P 		46.7
(-3)
A 		373
B 466.7
(3)
P 		194.5
(-0.9)
P 		118.6
(-2)
P 		46.4
(-3)
A 		420
C 437.2
(3)
P 		197.5
(-0.4)
P 		180.9
(-0.7)
P 		16.1
(-3)
A 		421
avr 441.2
(3) 		204.5
(-0.5) 		149.2
(-1.3) 		36.4
(-3) 		405

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 524
1 2 3 4 5 6 range
A 239.5
(-0.9)
P 		393
(1.1)
P 		537.2
(3)
P 		480.6
(2.3)
P 		290.9
(-0.2)
P 		75.7
(-3)
P 		462
B 270.7
(-0.6)
P 		351.2
(0.6)
P 		498.7
(3)
P 		417.4
(1.7)
P 		253.8
(-0.9)
P 		123.3
(-3)
P 		375
C 253.1
(-1.2)
P 		318.7
(-0.4)
P 		599.2
(3)
P 		498.2
(1.8)
P 		267.4
(-1)
P 		106.3
(-3)
P 		493
avr 254.4
(-0.9) 		354.3
(0.4) 		545
(3) 		465.4
(1.9) 		270.7
(-0.7) 		101.8
(-3) 		443
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 152.9
(3)
P 		48.1
(-1.3)
P 		38.7
(-1.7)
P 		6.8
(-3)
A 		146
B 148.8
(3)
P 		48
(-1.4)
P 		27.5
(-2.2)
P 		9.9
(-3)
A 		139
C 144.7
(3)
P 		56.8
(-0.7)
P 		63
(-0.5)
P 		2.7
(-3)
A 		142
avr 148.8
(3) 		51
(-1.1) 		43.1
(-1.5) 		6.5
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 44.2
(-1.7)
P 		139.8
(3)
P 		117
(1.9)
P 		121.9
(2.1)
P 		87.8
(0.4)
P 		18.4
(-3)
P 		121
B 94.2
(0.9)
P 		116.9
(2.7)
P 		121.1
(3)
P 		110.6
(2.2)
P 		103.1
(1.6)
P 		46
(-3)
P 		75
C 93.8
(-0)
P 		97.2
(0.2)
P 		152.5
(3)
P 		100.2
(0.3)
P 		86.5
(-0.4)
P 		35.6
(-3)
P 		117
avr 77.4
(-0.3) 		118
(2.2) 		130.2
(3) 		110.9
(1.8) 		92.5
(0.7) 		33.3
(-3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187663_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8470
Sequence Type Exemplar sequence
Representative Public ID F11E6.1 NCBI
Target Description F11E6.1 /REP_DB=WormBase Gene ID /WP=CE20669 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XTB0 protein_id:CAB02924.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070718(11), NM_171429(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070718 NCBI Caenorhabditis elegans F11E6.1a (F11E6.1) mRNA, complete cds. 11/11 A 
NM_171429 NCBI Caenorhabditis elegans F11E6.1c (F11E6.1) mRNA, complete cds. 11/11 None
F11E6.1a ENSEMBL cdna:known chromosome:CEL140:IV:17476578:17479328:1 gene:F11E6.1 11/11 A 
F11E6.1c ENSEMBL cdna:known chromosome:CEL140:IV:17476612:17479341:1 gene:F11E6.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070717 4/11 Cross Hyb Matching Probes A 
SNAP00000023040 4/11 Cross Hyb Matching Probes None
GENEFINDER00000023043 4/11 Cross Hyb Matching Probes None
SNAP00000042538 4/11 Cross Hyb Matching Probes None
GENEFINDER00000042545 4/11 Cross Hyb Matching Probes None
F11E6.1b 4/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178535 3 2 NM_070718 187663_at (11)
NM_171429 187663_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17476617-17479334(+) 100.0 100.0
Public Domain and Genome References
Ensembl F11E6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02924 Hypothetical protein F11E6.1a [Caenorhabditis elegans] emb|CAA20283.1| Hypothetical protein F11E6.1a [Caenorhabditis elegans] ref|NP_503119.1| F11E6.1a [Caenorhabditis elegans] 0.0
blast CAC35813 Hypothetical protein F11E6.1b [Caenorhabditis elegans] emb|CAC35807.1| Hypothetical protein F11E6.1b [Caenorhabditis elegans] ref|NP_503118.1| F11E6.1b [Caenorhabditis elegans] 0.0
blast CAE57468 Hypothetical protein CBG00434 [Caenorhabditis briggsae] 0.0
blast CAD42642 Hypothetical protein F11E6.1c [Caenorhabditis elegans] ref|NP_741501.1| F11E6.1c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001139 EMBL-EBI Glycoside hydrolase, family 30 1.0E-126
Pfam IPR001139 EMBL-EBI Glycoside hydrolase, family 30 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187663_AT
gggctgacactattttcaatgacccggaagcaaccaaatatgcagatggtgtagcagttc
actggtatggtaacttgtattctcctgctgttcttcttgatattactcaaaggcatcatc
caaccaaatttatttttggaaccgaggcatgtgctggctactttggacatcatggtccaa
taatgggagactggttccgcgcagaaagttatgcagatgatatcatcactgatcttaatc
atcacgttacgggatggactgactggaatctttgccttgatgaaactggtgggccaaatt
gggcctacaatgttgtagattccccaatcattgtcaaccgaactgctcaagagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCTGACACTATTTTCAATGACCC 29 491 959 Antisense
GGTATGGTAACTTGTATTCTCCTGC 515 505 1022 Antisense
CCTGCTGTTCTTCTTGATATTACTC 342 267 1042 Antisense
AAGGCATCATCCAACCAAATTTATT 398 159 1068 Antisense
TGGAACCGAGGCATGTGCTGGCTAC 180 547 1095 Antisense
GCTGGCTACTTTGGACATCATGGTC 124 295 1111 Antisense
TAATGGGAGACTGGTTCCGCGCAGA 601 633 1139 Antisense
ATCACGTTACGGGATGGACTGACTG 86 25 1199 Antisense
GGACTGACTGGAATCTTTGCCTTGA 24 525 1214 Antisense
GTAGATTCCCCAATCATTGTCAACC 236 457 1273 Antisense
ATTGTCAACCGAACTGCTCAAGAGT 360 3 1288 Antisense
Sequence Source Affymetrix Proprietary Database