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[187661_at]

Description ZK177.10 /REP_DB=WormBase Gene ID /WP=CE02090 /TR=SW:Q09376 /GB=AAG00048.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 32      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 0.8
(-3)
A 		23.6
(1.2)
A 		33.6
(3)
A 		31.9
(2.7)
A 		33
B 5.3
(-1.6)
A 		18.5
(3)
A 		7.1
(-1)
A 		1.4
(-3)
A 		17
C 11.2
(-3)
A 		16.4
(-1.6)
A 		33
(3)
A 		26.5
(1.2)
A 		22
avr 5.8
(-3) 		19.5
(1.4) 		24.6
(3) 		19.9
(1.5) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 28.5
(-0.3)
A 		30.2
(-0.1)
A 		17.8
(-1.4)
A 		58.8
(3)
A 		4.6
(-2.9)
A 		3.3
(-3)
A 		56
B 21.6
(-0.5)
A 		19.4
(-1)
A 		35.9
(3)
A 		15.7
(-1.9)
A 		11.3
(-3)
A 		19.6
(-1)
A 		25
C 2.5
(-3)
A 		37.2
(2.5)
A 		34.1
(2)
A 		17.4
(-0.6)
A 		40.5
(3)
P 		33.2
(1.8)
A 		38
avr 17.5
(-3) 		28.9
(2.2) 		29.3
(2.4) 		30.6
(3) 		18.8
(-2.4) 		18.7
(-2.5) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.3
(-3)
A 		5.1
(0.4)
A 		8.8
(3)
A 		4.7
(0.1)
A 		9
B 1.7
(-1)
A 		4.6
(3)
A 		1.6
(-1.2)
A 		0.3
(-3)
A 		4
C 3.7
(-3)
A 		4.7
(-2.2)
A 		11.5
(3)
A 		4.5
(-2.4)
A 		8
avr 1.9
(-3) 		4.8
(0.2) 		7.3
(3) 		3.2
(-1.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.3
(-1.1)
A 		10.7
(1.2)
A 		3.9
(-1.7)
A 		14.9
(3)
A 		1.4
(-2.7)
A 		0.8
(-3)
A 		14
B 7.5
(1.4)
A 		6.5
(0.1)
A 		8.7
(3)
A 		4.2
(-3)
A 		4.6
(-2.5)
A 		7.3
(1.1)
A 		5
C 0.9
(-3)
A 		11.4
(2.2)
A 		8.7
(0.8)
A 		3.5
(-1.7)
A 		13.1
(3)
P 		11.1
(2)
A 		12
avr 4.6
(-3) 		9.5
(3) 		7.1
(0.1) 		7.5
(0.6) 		6.4
(-0.8) 		6.4
(-0.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5401
Sequence Type Exemplar sequence
Representative Public ID ZK177.10 NCBI
Target Description ZK177.10 /REP_DB=WormBase Gene ID /WP=CE02090 /TR=SW:Q09376 /GB=AAG00048.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062658 NCBI Caenorhabditis elegans T BoX family member (tbx-35) (tbx-35) mRNA, complete cds. 11/11 None
SNAP00000012890 ENSEMBL cdna:SNAP chromosome:CEL140:II:5524170:5525349:-1 10/11 None
ZK177.10 ENSEMBL cdna:known chromosome:CEL140:II:5524756:5525349:-1 gene:ZK177.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012897 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5524753-5525347(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tbx-35
Ensembl ZK177.10
Entrez Gene 191239 Entrez gene
SwissProt Q09376 EMBL-EBI
WormBase CE02090 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG00048 T box family protein 35 [Caenorhabditis elegans] ref|NP_495059.1| T BoX family member (tbx-35) [Caenorhabditis elegans] sp|Q09376|TBX35_CAEEL Putative T-box protein 1.0E-103
blast AAG00048 T box family protein 35 [Caenorhabditis elegans] ref|NP_495059.1| T BoX family member (tbx-35) [Caenorhabditis elegans] sp|Q09376|TBX35_CAEEL Putative T-box protein 3.0E-78
blast CAE58301 Hypothetical protein CBG01410 [Caenorhabditis briggsae] 5.0E-23
blast CAE68586 Hypothetical protein CBG14447 [Caenorhabditis briggsae] 1.0E-20
blast CAE68586 Hypothetical protein CBG14447 [Caenorhabditis briggsae] 1.0E-12
blast CAE58301 Hypothetical protein CBG01410 [Caenorhabditis briggsae] 3.0E-12
Sequence
Target Sequence 
>C. ELEGANS:187661_AT
catgaatactcccagtccttcaatgctctcttttgatatggatatccctatcacagcatt
tcttcataattctgatgtctttcaattatttcatccagatattatggaacaggttgttgt
gaataaggaacgagtcttttttccaacaccaagttttaatgttttgaatttggagtctga
ttgtctgtacaaaatgagtcttcgatttgataaaactaataacaaacgattccaattcaa
cagacaaaccaaacagtggactgaatacgataaagtttcaaatcataaagaaagtgaggt
tttcgttcacccaagtgaaattcgaacaggagatgattggatgaaatctccagttgaatt
cttcatcaaagtgacaaatcttagaagttcggaatctgatgaagtggttagttgttataa
aatagtggaaacaatttttattttttatttcgaaaaccacccactaattaggaagcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGAATACTCCCAGTCCTTCAATG 340 211 30 Antisense
AGTCCTTCAATGCTCTCTTTTGATA 316 61 43 Antisense
GGATATCCCTATCACAGCATTTCTT 565 509 69 Antisense
ACAGCATTTCTTCATAATTCTGATG 425 109 82 Antisense
AATTCTGATGTCTTTCAATTATTTC 476 177 97 Antisense
GAATTTGGAGTCTGATTGTCTGTAC 357 325 195 Antisense
TTGTCTGTACAAAATGAGTCTTCGA 421 707 210 Antisense
ACGATTCCAATTCAACAGACAAACC 314 91 255 Antisense
AGTGAGGTTTTCGTTCACCCAAGTG 512 53 322 Antisense
GGATGAAATCTCCAGTTGAATTCTT 114 515 368 Antisense
AACCACCCACTAATTAGGAAGCCTG 632 145 484 Antisense
Sequence Source Affymetrix Proprietary Database