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[187660_s_at]

Description C03B1.12 /REP_DB=WormBase Gene ID /WP=CE03912 /TR=SW:Q11117 /GB=AAA81746.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 01      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 37      6grp_total > 24      4grp_total > 58      6grp_highest_sub > De      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2879
1 2 3 4 range
A 7889.3
(-0.9)
P 		9528.3
(3)
P 		9346.3
(2.6)
P 		7018.1
(-3)
P 		2510
B 8193
(0.6)
P 		8864.7
(3)
P 		8659.2
(2.3)
P 		7162.7
(-3)
P 		1702
C 7410.3
(-0.9)
P 		8526.5
(2.1)
P 		8840.2
(3)
P 		6649.3
(-3)
P 		2191
avr 7830.9
(-0.4) 		8973.2
(3) 		8948.6
(2.9) 		6943.4
(-3) 		2030

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2497
1 2 3 4 5 6 range
A 6524.5
(3)
P 		5865.3
(0.1)
P 		5569.2
(-1.2)
P 		5441.6
(-1.8)
P 		5158.4
(-3)
P 		5169.4
(-3)
P 		1366
B 6268.9
(3)
P 		5513.8
(1)
P 		5309.4
(0.4)
P 		5612.5
(1.2)
P 		4027.8
(-3)
P 		4403
(-2)
P 		2241
C 6296.6
(3)
P 		5152.1
(-0.9)
P 		6256.6
(2.9)
P 		4669.8
(-2.5)
P 		5540.5
(0.4)
P 		4532.5
(-3)
P 		1764
avr 6363.3
(3) 		5510.4
(-0.1) 		5711.7
(0.6) 		5241.3
(-1.1) 		4908.9
(-2.3) 		4701.6
(-3) 		1662
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2054
1 2 3 4 range
A 2872.5
(3)
P 		2068.3
(0.4)
P 		2443.3
(1.6)
P 		1027.3
(-3)
P 		1845
B 2612.7
(3)
P 		2189.4
(0.7)
P 		2006.5
(-0.3)
P 		1526.4
(-3)
P 		1086
C 2453
(1.1)
P 		2451.4
(1.1)
P 		3081.1
(3)
P 		1121.2
(-3)
P 		1960
avr 2646.1
(3) 		2236.4
(1.3) 		2510.3
(2.4) 		1225
(-3) 		1421

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1395
1 2 3 4 5 6 range
A 1202.7
(-3)
P 		2086
(3)
P 		1212.9
(-2.9)
P 		1380.1
(-1.8)
P 		1556.6
(-0.6)
P 		1258.6
(-2.6)
P 		883
B 2181.3
(3)
P 		1835.3
(0.7)
P 		1289.3
(-3)
P 		1486.6
(-1.7)
P 		1636.4
(-0.7)
P 		1641.8
(-0.6)
P 		892
C 2333.9
(3)
P 		1572.1
(-0.3)
P 		1592.4
(-0.2)
P 		939.1
(-3)
P 		1792.8
(0.7)
P 		1517.3
(-0.5)
P 		1395
avr 1906
(3) 		1831.1
(2.3) 		1364.9
(-2.1) 		1268.6
(-3) 		1661.9
(0.7) 		1472.6
(-1.1) 		637
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187660_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16342
Sequence Type Exemplar sequence
Representative Public ID C03B1.12 NCBI
Target Description C03B1.12 /REP_DB=WormBase Gene ID /WP=CE03912 /TR=SW:Q11117 /GB=AAA81746.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076671(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076671 NCBI Caenorhabditis elegans LAMP/CD68 related family member (lmp-1) (lmp-1) mRNA, complete cds. 11/11 A 
C03B1.12.1 ENSEMBL cdna:known chromosome:CEL140:X:6376393:6377639:-1 gene:C03B1.12 11/11 A 
C03B1.12.2 ENSEMBL cdna:known chromosome:CEL140:X:6376393:6377643:-1 gene:C03B1.12 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043889 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043892 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6376713-6377609(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lmp-1
Ensembl C03B1.12
Entrez Gene 180912 Entrez gene
SwissProt Q11117 EMBL-EBI
WormBase CE03912 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81746 Lamp (lysosome-associated membrane protein) homolog protein 1 [Caenorhabditis elegans] ref|NP_509072.1| LAMP/CD68 related family member (lmp-1) [Caenorhabditis elegans] gb|AAD56712.1| LMP-1 protein [Caenorhabditis elegans] sp|Q11117|LMP1_CAEEL LAMP family protein lmp-1 precursor 1.0E-114
blast CAE61249 Hypothetical protein CBG05052 [Caenorhabditis briggsae] 6.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR002000 EMBL-EBI Lysosome-associated membrane glycoprotein (Lamp)/CD68 9.4E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509072.1 1 202-224
C03B1.12.1 1 202-224
C03B1.12.2 1 202-224
Sequence
Target Sequence 
>C. ELEGANS:187660_S_AT
atcctcgacggagacttccagttcaatttggtcttcaacgagaagaacaccaccgagaag
ttcacggtcacattcaacgagacagtcagtgtcgaaggagattgcaacggagtccgcaac
aatcaatcggttcagacgttgaatattaagttcaaccctgaaggacaatctgcccgttac
gccaaagagtgggagctcgatatcgtgttcggatcatctagcaacgtcgcctttgagatc
attgactacaccctcaccactcagagaacggatcttgtcccatactttggaaagtttgtc
agagacgccaatgctgccggagatgttacagcaactcagaccaacgcttacaagtgctcc
accgccaagcttggactcgtcggaggatctaccattgacatcaagacatccaacgtgatt
gcatttgcacagatgaacggcaccgttttcccaactgaccaagtctacgaggtgtgctat
ttggatgctcgcaccaacgaagttgtccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCTCGACGGAGACTTCCAGTTCA 168 39 115 Antisense
CAATCTGCCCGTTACGCCAAAGAGT 356 179 280 Antisense
GGGAGCTCGATATCGTGTTCGGATC 509 495 305 Antisense
TCATCTAGCAACGTCGCCTTTGAGA 561 619 328 Antisense
CACCCTCACCACTCAGAGAACGGAT 375 201 363 Antisense
GAGAACGGATCTTGTCCCATACTTT 183 393 378 Antisense
ACGCCAATGCTGCCGGAGATGTTAC 506 91 419 Antisense
CAGACCAACGCTTACAAGTGCTCCA 305 203 451 Antisense
GACTCGTCGGAGGATCTACCATTGA 125 373 488 Antisense
GTTTTCCCAACTGACCAAGTCTACG 679 443 559 Antisense
TGCTCGCACCAACGAAGTTGTCCCA 671 579 600 Antisense
Sequence Source Affymetrix Proprietary Database