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[187659_at]

Description F58F12.3 /REP_DB=WormBase Gene ID /WP=CE01978 /TR=SW:Q09400 /GB=AAC46701.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 43      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 4.5
(-3)
A 		55.2
(3)
A 		28.9
(-0.1)
A 		10.9
(-2.2)
A 		51
B 24.9
(-0.5)
A 		56.3
(3)
A 		3.3
(-2.9)
A 		2.5
(-3)
A 		54
C 40.5
(2.4)
A 		44.2
(3)
A 		37.3
(2)
A 		4
(-3)
A 		40
avr 23.3
(-0.7) 		51.9
(3) 		23.2
(-0.7) 		5.8
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 46
(1.4)
A 		4
(-3)
A 		6.5
(-2.7)
A 		46.1
(1.4)
A 		36
(0.3)
A 		61.7
(3)
A 		58
B 8.4
(-1.9)
A 		2.3
(-3)
A 		5.3
(-2.4)
A 		6.1
(-2.3)
A 		26
(1.4)
A 		34.9
(3)
A 		33
C 4.2
(-2.8)
A 		5.9
(-2.6)
A 		5.2
(-2.7)
A 		2.8
(-3)
A 		29.2
(0.6)
A 		47
(3)
A 		44
avr 19.5
(-0.9) 		4.1
(-3) 		5.7
(-2.8) 		18.3
(-1.1) 		30.4
(0.6) 		47.9
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.6
(-3)
A 		12
(3)
A 		7.6
(0.5)
A 		1.6
(-3)
A 		10
B 7.9
(0.3)
A 		13.9
(3)
A 		0.8
(-2.9)
A 		0.5
(-3)
A 		13
C 13.4
(3)
A 		12.7
(2.7)
A 		13
(2.8)
A 		0.7
(-3)
A 		13
avr 7.6
(0.4) 		12.9
(3) 		7.1
(0.1) 		0.9
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.5
(0.1)
A 		1.4
(-3)
A 		1.4
(-3)
A 		11.7
(1.5)
A 		10.9
(1.2)
A 		15
(3)
A 		14
B 2.9
(-2)
A 		0.8
(-3)
A 		1.3
(-2.8)
A 		1.6
(-2.6)
A 		10.6
(1.8)
A 		13
(3)
A 		12
C 1.5
(-2.6)
A 		1.8
(-2.5)
A 		1.3
(-2.7)
A 		0.6
(-3)
A 		9.4
(0.5)
A 		15.7
(3)
A 		15
avr 4.3
(-1.6) 		1.3
(-3) 		1.3
(-3) 		4.6
(-1.5) 		10.3
(1.1) 		14.6
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187659_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5953
Sequence Type Exemplar sequence
Representative Public ID F58F12.3 NCBI
Target Description F58F12.3 /REP_DB=WormBase Gene ID /WP=CE01978 /TR=SW:Q09400 /GB=AAC46701.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062887(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062887 NCBI Caenorhabditis elegans F58F12.3 (F58F12.3) mRNA, complete cds. 11/11 None
SNAP00000028382 ENSEMBL cdna:SNAP chromosome:CEL140:II:6389257:6391203:-1 11/11 None
GENEFINDER00000028383 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6387472:6391203:-1 11/11 None
F58F12.3 ENSEMBL cdna:known chromosome:CEL140:II:6389257:6391203:-1 gene:F58F12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6389253-6391200(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58F12.3
Entrez Gene 186539 Entrez gene
SwissProt Q09400 EMBL-EBI
WormBase CE01978 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46701 Hypothetical protein F58F12.3 [Caenorhabditis elegans] ref|NP_495288.1| F58F12.3 [Caenorhabditis elegans] sp|Q09400|YRB3_CAEEL Hypothetical protein F58F12.3 in chromosome II 0.0
blast AAC46700 Hypothetical protein F58F12.2 [Caenorhabditis elegans] ref|NP_495287.1| F58F12.2 [Caenorhabditis elegans] sp|Q09399|YRB2_CAEEL Hypothetical protein F58F12.2 in chromosome II 1.0E-42
blast T16502 hypothetical protein F58F12.2 - Caenorhabditis elegans 1.0E-35
blast AAC46669 Hypothetical protein K03H9.3 [Caenorhabditis elegans] ref|NP_495293.1| K03H9.3 [Caenorhabditis elegans] 1.0E-32
blast AAC46669 Hypothetical protein K03H9.3 [Caenorhabditis elegans] ref|NP_495293.1| K03H9.3 [Caenorhabditis elegans] 1.0E-31
blast AAC46667 Hypothetical protein K03H9.1 [Caenorhabditis elegans] ref|NP_495295.1| K03H9.1 [Caenorhabditis elegans] 7.0E-22
Sequence
Target Sequence 
>C. ELEGANS:187659_AT
taaactggagcacttgccatcctgtaaaatggaatggttgctgcacgcccttcaacgcga
tacgctggatgataagatgaaaattataaagcatgcagaaacttatttccgagggcctgc
aatccttcaaattttagaatctgctgtgctctcgctttcaaatgacatacatattgtacg
agaattggccattgcacatgaaaaatcgggaaatttcgagaaaagcatgcaattcctcaa
agattgcattgataacaattcttggaactcaacggaactcaccgcctcaatgatccattg
cgaacacgctggtgcaaatcgtacctcaaaggtttatttggaagcaatgtattccatatt
caactttacaacctctgaagaagccgcgttgatcgagattgttaaagtacttgtagaaac
tgattctcctctctctgcaaaatcactttctcttgaattgatgacgagatatgcaggaac
acccacttttgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACTGGAGCACTTGCCATCCTGT 646 639 783 Antisense
AAATGGAATGGTTGCTGCACGCCCT 365 121 809 Antisense
GCCCTTCAACGCGATACGCTGGATG 252 285 829 Antisense
AACTTATTTCCGAGGGCCTGCAATC 509 137 882 Antisense
ATTTTAGAATCTGCTGTGCTCTCGC 687 13 913 Antisense
GTGCTCTCGCTTTCAAATGACATAC 648 479 928 Antisense
GATCCATTGCGAACACGCTGGTGCA 559 415 1074 Antisense
ATTCCATATTCAACTTTACAACCTC 596 7 1133 Antisense
TGTAGAAACTGATTCTCCTCTCTCT 166 561 1194 Antisense
CTCTCTCTGCAAAATCACTTTCTCT 395 231 1211 Antisense
ATGCAGGAACACCCACTTTTGAGAA 446 43 1253 Antisense
Sequence Source Affymetrix Proprietary Database