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[187658_at]

Description C05D11.7 /REP_DB=WormBase Gene ID /WP=CE03927 /TR=SW:Q11186 /GB=AAB53832.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 84      6grp_total > 69      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1587
1 2 3 4 range
A 965.5
(-0.8)
P 		529.6
(-2.6)
P 		443
(-3)
P 		1900.6
(3)
P 		1458
B 1224.2
(-0.2)
P 		592.3
(-2.9)
P 		572.8
(-3)
P 		1984.3
(3)
P 		1412
C 1495.4
(1)
P 		547.6
(-2.7)
P 		460.4
(-3)
P 		2029.8
(3)
P 		1569
avr 1228.4
(-0) 		556.5
(-2.7) 		492.1
(-3) 		1971.6
(3) 		1480

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 537
1 2 3 4 5 6 range
A 495.3
(-1.1)
P 		726.8
(1.5)
P 		499.4
(-1)
P 		321.9
(-3)
P 		527.9
(-0.7)
P 		859
(3)
P 		537
B 579.4
(1.5)
P 		533
(0.5)
P 		411.3
(-1.9)
P 		355.8
(-3)
P 		462.2
(-0.9)
P 		656
(3)
P 		300
C 663.8
(1.3)
P 		468.4
(-1.4)
P 		399.7
(-2.3)
P 		350.4
(-3)
P 		560.7
(-0.1)
P 		788.6
(3)
P 		438
avr 579.5
(0.3) 		576.1
(0.3) 		436.8
(-1.7) 		342.7
(-3) 		516.9
(-0.5) 		767.9
(3) 		425
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 351.5
(3)
P 		115
(-3)
P 		115.8
(-3)
P 		278.2
(1.1)
P 		237
B 390.4
(2.3)
P 		146.3
(-2.7)
P 		132.7
(-3)
P 		422.8
(3)
P 		290
C 495
(3)
P 		157.4
(-3)
P 		160.5
(-2.9)
P 		342.3
(0.3)
P 		338
avr 412.3
(3) 		139.6
(-2.9) 		136.3
(-3) 		347.8
(1.6) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 91.3
(-2.7)
P 		258.5
(3)
P 		108.8
(-2.1)
P 		81.6
(-3)
P 		159.3
(-0.4)
P 		209.1
(1.3)
P 		177
B 201.6
(1.3)
P 		177.4
(0.3)
P 		99.9
(-2.8)
P 		94.2
(-3)
P 		187.8
(0.7)
P 		244.6
(3)
P 		150
C 246.1
(2.4)
P 		142.9
(-0.8)
P 		101.7
(-2)
P 		70.5
(-3)
P 		181.4
(0.4)
P 		264
(3)
P 		194
avr 179.7
(0.7) 		192.9
(1.2) 		103.5
(-2.2) 		82.1
(-3) 		176.2
(0.6) 		239.2
(3) 		157
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6888
Sequence Type Exemplar sequence
Representative Public ID C05D11.7 NCBI
Target Description C05D11.7 /REP_DB=WormBase Gene ID /WP=CE03927 /TR=SW:Q11186 /GB=AAB53832.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171168(10), NM_171167(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171168 NCBI Caenorhabditis elegans C05D11.7a (C05D11.7) mRNA, complete cds. 10/11 None
NM_171167 NCBI Caenorhabditis elegans C05D11.7b (C05D11.7) mRNA, complete cds. 10/11 A 
SNAP00000019451 ENSEMBL cdna:SNAP chromosome:CEL140:III:6416083:6419390:-1 10/11 None
GENEFINDER00000019465 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6416083:6419390:-1 10/11 None
C05D11.7b ENSEMBL cdna:known chromosome:CEL140:III:6415715:6419390:-1 gene:C05D11.7 10/11 A 
C05D11.7a.2 ENSEMBL cdna:known chromosome:CEL140:III:6415715:6421648:-1 gene:C05D11.7 10/11 A 
C05D11.7a.1 ENSEMBL cdna:known chromosome:CEL140:III:6415715:6419393:-1 gene:C05D11.7 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6416675-6419389(-) 100.0 100.0
Public Domain and Genome References
Ensembl C05D11.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53832 Hypothetical protein C05D11.7a [Caenorhabditis elegans] ref|NP_741196.1| C05D11.7a [Caenorhabditis elegans] sp|Q11186|YPD7_CAEEL Hypothetical protein C05D11.7 in chromosome III 0.0
blast AAM15547 Hypothetical protein C05D11.7b [Caenorhabditis elegans] ref|NP_741195.1| C05D11.7b [Caenorhabditis elegans] 0.0
blast C88482 protein C05D11.7 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 7.3E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741196.1 2 10-32,45-67
NP_741195.1 2 10-32,45-67
C05D11.7b 2 10-32,45-67
C05D11.7a.2 2 10-32,45-67
C05D11.7a.1 2 10-32,45-67
SNAP00000019451 2 10-32,45-67
GENEFINDER00000019465 2 10-32,45-67
Sequence
Target Sequence 
>C. ELEGANS:187658_AT
tcagcccaccacgctggattatgctcaaattccgcggtttggcagatttcattctcggcg
aagttgaaaagcagaaatcgagatacacaaacttctcctgtctggttgctgtcgctgaaa
ctgacagcttcggatccgtgctcgcatcgtccacaatggaaaaagaggagcataaggaga
ttgagttgagtgaagatgccaagaaagagatgatccttttacgtgaacgagatcgccgaa
gaaagttgctcaagaaagctggaaagattactccgaacaactcagagaatcaatttgatg
aaacaagtgtttatgacgtggattcatttgaacatgtcattgatttcacgaaaagtcatg
aagcactttatgaattccattatcgtgatgagaatcaagtcatgaaaacgtttggattgt
tcactgatagccaacaacggccatattcatcagcatcacaacatcagcatcatcatacaa
aaagcctcggaggtactagccgacttgttcatgttccagaggaagacgaagatgctccat
tatccgcagtttcgctctgcggttatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCCCACCACGCTGGATTATGCT 649 623 1199 Antisense
TATGCTCAAATTCCGCGGTTTGGCA 121 657 1218 Antisense
GTTTGGCAGATTTCATTCTCGGCGA 598 451 1235 Antisense
ATACACAAACTTCTCCTGTCTGGTT 198 23 1281 Antisense
TCTGGTTGCTGTCGCTGAAACTGAC 533 607 1299 Antisense
GAGATGATCCTTTTACGTGAACGAG 392 395 1405 Antisense
GAAAGATTACTCCGAACAACTCAGA 176 361 1460 Antisense
CAACGGCCATATTCATCAGCATCAC 446 187 1633 Antisense
AAGCCTCGGAGGTACTAGCCGACTT 529 149 1680 Antisense
AAGATGCTCCATTATCCGCAGTTTC 564 155 1727 Antisense
CGCAGTTTCGCTCTGCGGTTATCTT 498 251 1743 Antisense
Sequence Source Affymetrix Proprietary Database