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[187656_s_at]

Description C33H5.14 /REP_DB=WormBase Gene ID /WP=CE04157 /TR=SW:Q18411 /GB=AAA82272.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 92      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 73      6grp_total > 84      4grp_total > 59      6grp_highest_sub > 04      6grp_cgc > 77      6grp_high1_sub > 04_05      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 513
1 2 3 4 range
A 386.2
(1.2)
P 		436
(2.1)
P 		484.3
(3)
P 		163.5
(-3)
P 		321
B 339.2
(1.1)
P 		438.1
(3)
P 		391.3
(2.1)
P 		132.5
(-3)
P 		306
C 312.2
(-0.7)
P 		478.4
(1.3)
P 		625.3
(3)
P 		112.6
(-3)
P 		513
avr 345.9
(0.5) 		450.8
(2.2) 		500.3
(3) 		136.2
(-3) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 369.1
(-3)
P 		375.8
(-2.9)
P 		434.5
(-1.7)
P 		571.3
(1.1)
P 		665.6
(3)
P 		508.5
(-0.2)
P 		297
B 397.2
(-2.6)
P 		461.5
(-1.1)
P 		379.5
(-3)
P 		580.3
(1.5)
P 		644.5
(3)
P 		564.1
(1.2)
P 		265
C 360.2
(-3)
P 		525.2
(-0)
P 		427.7
(-1.8)
P 		693.4
(3)
P 		557.1
(0.5)
P 		567.4
(0.7)
P 		333
avr 375.5
(-3) 		454.2
(-1.1) 		413.9
(-2.1) 		615
(2.8) 		622.4
(3) 		546.7
(1.2) 		247
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 140.6
(3)
P 		94.7
(0.6)
P 		126.6
(2.3)
P 		23.9
(-3)
P 		117
B 108.2
(3)
P 		108.2
(3)
P 		90.7
(1.7)
P 		28.2
(-3)
P 		80
C 103.3
(-0.5)
P 		137.5
(0.6)
P 		217.9
(3)
P 		19
(-3)
P 		199
avr 117.4
(1.6) 		113.5
(1.4) 		145.1
(3) 		23.7
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 68
(-3)
P 		133.7
(-0)
P 		94.6
(-1.8)
P 		144.9
(0.5)
P 		200.8
(3)
P 		123.8
(-0.5)
P 		133
B 138.2
(-1.4)
P 		153.6
(-0.8)
P 		92.2
(-3)
P 		153.7
(-0.8)
P 		261.9
(3)
P 		210.4
(1.2)
P 		170
C 133.5
(-1.2)
P 		160.3
(0.8)
P 		108.8
(-3)
P 		139.4
(-0.7)
P 		180.3
(2.3)
P 		189.9
(3)
P 		81
avr 113.2
(-2.2) 		149.2
(-0.4) 		98.5
(-3) 		146
(-0.5) 		214.3
(3) 		174.7
(0.9) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187656_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9554
Sequence Type Exemplar sequence
Representative Public ID C33H5.14 NCBI
Target Description C33H5.14 /REP_DB=WormBase Gene ID /WP=CE04157 /TR=SW:Q18411 /GB=AAA82272.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068888(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068888 NCBI Caenorhabditis elegans Nucleoside TriPhosphatase family member (ntp-1) (ntp-1) mRNA, complete cds. 11/11 None
SNAP00000004483 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7792407:7794634:-1 11/11 None
GENEFINDER00000004505 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7789996:7794634:-1 11/11 None
C33H5.14.2 ENSEMBL cdna:known chromosome:CEL140:IV:7792341:7794641:-1 gene:C33H5.14 11/11 None
C33H5.14.1 ENSEMBL cdna:known chromosome:CEL140:IV:7792341:7794792:-1 gene:C33H5.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7792412-7794568(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ntp-1
Ensembl C33H5.14
Entrez Gene 177567 Entrez gene
SwissProt Q18411 EMBL-EBI
WormBase CE04157 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262661_S_AT nucleoside phosphatase family protein / GDA1/CD39 family protein at
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82272 Nucleoside triphosphatase protein 1 [Caenorhabditis elegans] ref|NP_501289.1| Nucleoside TriPhosphatase family member (ntp-1) [Caenorhabditis elegans] sp|Q18411|NTP1_CAEEL Putative nucleoside-triphosphatase ntp-1 0.0
blast CAE70887 Hypothetical protein CBG17677 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000407 EMBL-EBI Nucleoside phosphatase GDA1/CD39 1.0E-126
Pfam IPR000407 EMBL-EBI Nucleoside phosphatase GDA1/CD39 1.0E-126
Pfam IPR000407 EMBL-EBI Nucleoside phosphatase GDA1/CD39 1.0E-126
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.8E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501289.1 1 440-462
C33H5.14.2 1 440-462
C33H5.14.1 1 440-462
SNAP00000004483 2 7-29,452-474
GENEFINDER00000004505 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:187656_S_AT
taaagctcaaccttcttgtccaaacccaacatgtttcctacgtaacgtgattgctccatc
agttaacctatcaactgttcaattgtatggcttctcagaatactggtatacgacaagcaa
tttcggatctggtggcgaatatcattatcaaaaatttacggacgaagttcgaaaatactg
ccaaaaagattggaatgatattcaagatggattcaaaagaaatgaatttcccaacgctga
cattgaacgacttggaacaaactgtttcaaagctgcttgggtgaccagtgtacttcatga
cggttttaatgtggataaaaccaagcatttgtttcagagtgttctgaaaatagccggtga
agaaatgcaatgggctctaggagcaatgctttatcactcaaaggatctcaaattcaacct
actagaacaacttgaagttgcgcaatctacccaacaaatatcaaatttcttctcattttt
tgtcattcttatcattgtactggcagttgctttatatcgccaacttcaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAGCTCAACCTTCTTGTCCAAAC 676 639 873 Antisense
GTCCAAACCCAACATGTTTCCTACG 639 471 890 Antisense
TCCTACGTAACGTGATTGCTCCATC 377 315 908 Antisense
TTGCTCCATCAGTTAACCTATCAAC 482 703 923 Antisense
AACTGTTCAATTGTATGGCTTCTCA 423 143 945 Antisense
GAATTTCCCAACGCTGACATTGAAC 304 325 1096 Antisense
CAAACTGTTTCAAAGCTGCTTGGGT 31 193 1130 Antisense
GGGTGACCAGTGTACTTCATGACGG 670 497 1151 Antisense
ACTTGAAGTTGCGCAATCTACCCAA 476 95 1302 Antisense
GTCATTCTTATCATTGTACTGGCAG 421 467 1354 Antisense
TGCTTTATATCGCCAACTTCAATCT 639 579 1380 Antisense
Sequence Source Affymetrix Proprietary Database