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[187655_at]

Description Y110A2AL.12 /REP_DB=WormBase Gene ID /WP=CE25188 /TR=Q9N493 /GB=AAF60407.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 55      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 76.7
(3)
A 		17.6
(-2.6)
A 		13.2
(-3)
A 		25.8
(-1.8)
A 		64
B 46.6
(-0.4)
A 		23
(-3)
A 		78.2
(3)
A 		24.9
(-2.8)
A 		55
C 33.8
(3)
A 		26.7
(0.9)
A 		13.8
(-3)
A 		30.7
(2.1)
A 		20
avr 52.4
(3) 		22.4
(-3) 		35.1
(-0.5) 		27.1
(-2.1) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 42
(1.1)
A 		4.2
(-3)
A 		60.2
(3)
A 		11.7
(-2.2)
A 		33.7
(0.2)
A 		13
(-2.1)
A 		56
B 64.6
(3)
A 		21.6
(-2.5)
A 		17.6
(-3)
A 		22.2
(-2.4)
A 		36.1
(-0.6)
A 		58.1
(2.2)
A 		47
C 10.6
(-2.5)
A 		48
(3)
A 		13.8
(-2)
A 		7
(-3)
A 		11.7
(-2.3)
A 		13.9
(-2)
A 		41
avr 39.1
(3) 		24.6
(-0.4) 		30.5
(1) 		13.6
(-3) 		27.2
(0.2) 		28.3
(0.5) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 27.9
(3)
A 		3.8
(-2.9)
A 		3.4
(-3)
A 		3.8
(-2.9)
A 		25
B 14.9
(1.5)
A 		5.7
(-2.8)
A 		18.1
(3)
A 		5.3
(-3)
A 		13
C 11.2
(3)
A 		7.7
(-0.3)
A 		4.8
(-3)
A 		5.2
(-2.6)
A 		6
avr 18
(3) 		5.7
(-2.6) 		8.8
(-1.2) 		4.8
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 7.7
(0.2)
A 		1.5
(-3)
A 		13.1
(3)
A 		3
(-2.2)
A 		10.2
(1.5)
A 		3.2
(-2.1)
A 		12
B 22.5
(3)
A 		7.2
(-2)
A 		4.3
(-3)
A 		5.9
(-2.5)
A 		14.7
(0.4)
A 		21.7
(2.7)
A 		18
C 3.9
(-1.9)
A 		14.7
(3)
A 		3.5
(-2.1)
A 		1.4
(-3)
A 		3.8
(-1.9)
A 		4.6
(-1.6)
A 		13
avr 11.4
(3) 		7.8
(0.3) 		7
(-0.3) 		3.4
(-3) 		9.6
(1.7) 		9.8
(1.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187655_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4789
Sequence Type Exemplar sequence
Representative Public ID Y110A2AL.12 NCBI
Target Description Y110A2AL.12 /REP_DB=WormBase Gene ID /WP=CE25188 /TR=Q9N493 /GB=AAF60407.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027236(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027236 NCBI Caenorhabditis elegans Y110A2AL.12a (Y110A2AL.12) mRNA, complete cds. 10/11 None
GENEFINDER00000036305 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2880522:2884893:-1 10/11 None
Y110A2AL.12a ENSEMBL cdna:known chromosome:CEL140:II:2878953:2884893:-1 gene:Y110A2AL.12 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
190940 2 1 NM_001027236 187655_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2882672-2884892(-) 84.73 100.0
Public Domain and Genome References
Ensembl Y110A2AL.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60407 Hypothetical protein Y110A2AL.12a [Caenorhabditis elegans] ref|NP_001022407.1| Y110A2AL.12a [Caenorhabditis elegans] 0.0
blast AAF60406 Hypothetical protein Y110A2AL.12b [Caenorhabditis elegans] ref|NP_001022408.1| Y110A2AL.12b [Caenorhabditis elegans] 1.0E-124
blast CAE72445 Hypothetical protein CBG19615 [Caenorhabditis briggsae] 7.0E-89
blast AAF60406 Hypothetical protein Y110A2AL.12b [Caenorhabditis elegans] ref|NP_001022408.1| Y110A2AL.12b [Caenorhabditis elegans] 8.0E-68
blast CAE72445 Hypothetical protein CBG19615 [Caenorhabditis briggsae] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR009447 EMBL-EBI GWT1 2.2E-82
Pfam IPR009447 EMBL-EBI GWT1 2.3E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022407.1 9 27-49,61-83,87-109,142-164,174-193,214-236,312-334,347-364,379-398
Y110A2AL.12a 9 27-49,61-83,87-109,142-164,174-193,214-236,312-334,347-364,379-398
GENEFINDER00000036305 8 27-44,65-87,91-113,146-168,178-197,218-240,260-282,347-369
Sequence
Target Sequence 
>C. ELEGANS:187655_AT
gattcacctactggctaaaattccttgaaaaaaaattccaaacagtttccaaaaaaattc
aaaaaagttccaaaaaaaaaatattcacctactggctaaaattcgttgccgacgtcatat
tcctctgcgttccatcccttctcgcaatgacagtgctcaacgagcacctcatcctcctct
ccaccataatgatcatcatctctgcagttttgctcatttttgtgctcttcgaagccgccg
agcaacaccacaaccaccatcagctctccgtgattcttcgacaatcgtggagtcgattcg
tcgaagaacagcataaacccacgcaatttgtcacctatttccggtcccttaccatgattt
tggtcactctcgccattttggctgtggattttccgatttttccgagaaaatacgcaaaaa
ccgagaaattcggacattcgatgatggatgtcggagtggcggctttcctgtttcaggcgg
cgctaggcagccgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCACCTACTGGCTAAAATTCCT 142 429 695 Antisense
AATTCGTTGCCGACGTCATATTCCT 569 175 794 Antisense
ATCCCTTCTCGCAATGACAGTGCTC 612 37 828 Antisense
CTCCTCTCCACCATAATGATCATCA 478 235 868 Antisense
GCTCATTTTTGTGCTCTTCGAAGCC 687 299 906 Antisense
CTCTCCGTGATTCTTCGACAATCGT 592 231 958 Antisense
AACCCACGCAATTTGTCACCTATTT 352 145 1010 Antisense
TCCGGTCCCTTACCATGATTTTGGT 704 583 1034 Antisense
TCACTCTCGCCATTTTGGCTGTGGA 246 627 1058 Antisense
GATGGATGTCGGAGTGGCGGCTTTC 396 407 1137 Antisense
TTCAGGCGGCGCTAGGCAGCCGAAT 160 685 1166 Antisense
Sequence Source Affymetrix Proprietary Database