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[187654_s_at]

Description F11G11.9 /REP_DB=WormBase Gene ID /WP=CE09351 /TR=SW:P91247 /GB=AAB37840.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 37.7
(-0.5)
A 		63.7
(3)
A 		35.4
(-0.8)
A 		18.5
(-3)
A 		45
B 30.1
(0.5)
A 		7.5
(-3)
A 		36.7
(1.5)
A 		46.6
(3)
A 		39
C 1.5
(-3)
A 		43.4
(3)
A 		10.9
(-1.7)
A 		3.2
(-2.8)
A 		42
avr 23.1
(-2.9) 		38.2
(3) 		27.7
(-1.1) 		22.8
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 59.2
(-2.4)
A 		45.2
(-2.9)
A 		41.3
(-3)
A 		72.3
(-2)
P 		144.2
(0.2)
P 		234.7
(3)
P 		193
B 24.5
(-3)
A 		50.3
(-2.4)
A 		38
(-2.7)
A 		47.4
(-2.5)
M 		249.4
(2)
P 		293.1
(3)
P 		269
C 13.6
(-3)
A 		40.8
(-2.4)
A 		25.2
(-2.7)
A 		43.8
(-2.3)
A 		169.8
(0.7)
P 		265
(3)
P 		251
avr 32.4
(-3) 		45.4
(-2.7) 		34.8
(-2.9) 		54.5
(-2.4) 		187.8
(1) 		264.3
(3) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.7
(2.9)
A 		13.8
(3)
A 		9.3
(0.6)
A 		2.7
(-3)
A 		11
B 9.6
(2.8)
A 		1.9
(-3)
A 		8.5
(2)
A 		9.9
(3)
A 		8
C 0.5
(-3)
A 		12.5
(3)
A 		3.8
(-1.4)
A 		0.5
(-3)
A 		12
avr 7.9
(1.2) 		9.4
(3) 		7.2
(0.4) 		4.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 10.9
(-2.8)
A 		16.1
(-2.1)
A 		9
(-3)
A 		18.3
(-1.8)
P 		43.5
(1.3)
P 		57.1
(3)
P 		48
B 8.5
(-3)
A 		16.7
(-2.5)
A 		9.2
(-3)
A 		12.6
(-2.8)
M 		101.3
(2.5)
P 		109.3
(3)
P 		101
C 5
(-3)
A 		12.5
(-2.5)
A 		6.4
(-2.9)
A 		8.8
(-2.7)
A 		54.9
(0.6)
P 		88.7
(3)
P 		84
avr 8.1
(-3) 		15.1
(-2.5) 		8.2
(-3) 		13.2
(-2.6) 		66.6
(1.6) 		85
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187654_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4849
Sequence Type Exemplar sequence
Representative Public ID F11G11.9 NCBI
Target Description F11G11.9 /REP_DB=WormBase Gene ID /WP=CE09351 /TR=SW:P91247 /GB=AAB37840.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062476 NCBI Caenorhabditis elegans F11G11.9 (F11G11.9) mRNA, complete cds. 11/11 None
SNAP00000005482 ENSEMBL cdna:SNAP chromosome:CEL140:II:4862301:4863392:-1 10/11 None
GENEFINDER00000005497 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4862301:4863392:-1 10/11 None
F11G11.9 ENSEMBL cdna:known chromosome:CEL140:II:4862301:4863443:-1 gene:F11G11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4862299-4863391(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11G11.9
Entrez Gene 173838 Entrez gene
SwissProt P91247 EMBL-EBI
WormBase CE09351 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494877 F11G11.9 [Caenorhabditis elegans] gb|AAB37840.1| Hypothetical protein F11G11.9 [Caenorhabditis elegans] sp|P91247|THT1_CAEEL Putative thiosulfate sulfurtransferase F11G11.9 1.0E-160
blast NP_494877 F11G11.9 [Caenorhabditis elegans] gb|AAB37840.1| Hypothetical protein F11G11.9 [Caenorhabditis elegans] sp|P91247|THT1_CAEEL Putative thiosulfate sulfurtransferase F11G11.9 1.0E-151
blast NP_494877 F11G11.9 [Caenorhabditis elegans] gb|AAB37840.1| Hypothetical protein F11G11.9 [Caenorhabditis elegans] sp|P91247|THT1_CAEEL Putative thiosulfate sulfurtransferase F11G11.9 1.0E-150
blast AAK68541 Hypothetical protein Y59H11AM.3 [Caenorhabditis elegans] gb|AAK68540.1| Hypothetical protein Y59H11AM.2 [Caenorhabditis elegans] ref|NP_501462.1| Y59H11AM.2 [Caenorhabditis elegans] ref|NP_501461.1| Y59H11AM.3 [Caenorhabditis elegans] 1.0E-139
blast CAE72573 Hypothetical protein CBG19760 [Caenorhabditis briggsae] 1.0E-136
blast CAE72573 Hypothetical protein CBG19760 [Caenorhabditis briggsae] 1.0E-135
blast AAK68541 Hypothetical protein Y59H11AM.3 [Caenorhabditis elegans] gb|AAK68540.1| Hypothetical protein Y59H11AM.2 [Caenorhabditis elegans] ref|NP_501462.1| Y59H11AM.2 [Caenorhabditis elegans] ref|NP_501461.1| Y59H11AM.3 [Caenorhabditis elegans] 1.0E-127
Protein Domains
Database ID Description E-Value
Pfam IPR001763 EMBL-EBI Rhodanese-like 3.3E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494877.1 2 200-222,249-271
F11G11.9 2 200-222,249-271
SNAP00000005482 2 241-263,290-312
GENEFINDER00000005497 2 236-258,285-307
Sequence
Target Sequence 
>C. ELEGANS:187654_S_AT
gcctactacccatcggaggacgaacgtttcactttgtacactccagaggaattctcgtcg
tatgtcaagagattgggtgtcttcaatggagatcacttggttatctatggacgtggaaaa
gatggtggtatggctgctgcttctcgtgcatactggacattcagatactacggttataca
actgtatctgtgttgaacggtggaatcgaagcattcaaacttgcccaaggtgtcgttcaa
tctgattcgaaggccgagggtattcgttgcaaggatgcaattcacttcccaatcggagaa
gtttgtgctgcaaagggattcaagaagaagactgattgtgatcaagcttttgccgccaag
ggaatcaaggtcggagacactgtcgtcattagctgcggaatcggactttcggcttctgcc
atctgcctcgccgctgctcgttctggaatcgttgccaagctgtacaatggaggagtccac
gagttggcttacaaggctccacaacacctcaacatgcgagtcactttgttactacacgcg
attactgtacttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTACTACCCATCGGAGGACGAAC 38 281 229 Antisense
GGACGAACGTTTCACTTTGTACACT 531 479 246 Antisense
GGGTGTCTTCAATGGAGATCACTTG 56 499 303 Antisense
GGTGTCGTTCAATCTGATTCGAAGG 570 499 457 Antisense
GAAGGCCGAGGGTATTCGTTGCAAG 702 331 477 Antisense
ATCAAGCTTTTGCCGCCAAGGGAAT 212 25 569 Antisense
ATCAAGGTCGGAGACACTGTCGTCA 197 25 592 Antisense
CACTGTCGTCATTAGCTGCGGAATC 194 197 606 Antisense
ACAACACCTCAACATGCGAGTCACT 673 111 729 Antisense
GCGAGTCACTTTGTTACTACACGCG 686 287 744 Antisense
TACTACACGCGATTACTGTACTTAG 616 645 758 Antisense
Sequence Source Affymetrix Proprietary Database