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[187651_at]

Description C05D11.3 /REP_DB=WormBase Gene ID /WP=CE01133 /TR=SW:Q11183 /GB=AAB53824.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 27      4grp_highest_8_8 > 34      4grp_high_8_8 > 49      6grp_highest_nonorm > 76      6grp_total > 17      4grp_total > 62      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 705
1 2 3 4 range
A 1249.3
(3)
P 		916
(0)
P 		950
(0.3)
P 		574.7
(-3)
P 		675
B 1279.9
(3)
P 		919.2
(-1.2)
P 		971.3
(-0.6)
P 		762.8
(-3)
P 		517
C 1089.4
(1.3)
P 		1048.5
(0.7)
P 		1209.1
(3)
P 		797.5
(-3)
P 		412
avr 1206.2
(3) 		961.2
(0) 		1043.5
(1) 		711.7
(-3) 		495

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 590
1 2 3 4 5 6 range
A 1191.2
(3)
P 		1161
(2.3)
P 		1128.8
(1.5)
P 		1178.9
(2.7)
P 		949.2
(-3)
P 		1079
(0.2)
P 		242
B 1197.2
(2.1)
P 		1216.3
(2.5)
P 		1148.8
(1.2)
P 		933.4
(-3)
P 		1241.5
(3)
P 		1119.7
(0.6)
P 		308
C 1523.3
(3)
P 		1091.2
(-2.2)
P 		1043.3
(-2.8)
P 		1077.5
(-2.4)
P 		1023.5
(-3)
P 		1122.1
(-1.8)
P 		500
avr 1303.9
(3) 		1156.2
(-0.7) 		1107
(-1.9) 		1063.3
(-3) 		1071.4
(-2.8) 		1106.9
(-1.9) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 371
1 2 3 4 range
A 454.9
(3)
P 		198.8
(-1.1)
P 		248.3
(-0.3)
P 		84.1
(-3)
P 		371
B 408.1
(3)
P 		227
(-1.4)
P 		225.1
(-1.5)
P 		162.6
(-3)
P 		246
C 360.6
(1.7)
P 		301.5
(0.5)
P 		421.4
(3)
P 		134.5
(-3)
P 		287
avr 407.9
(3) 		242.4
(-0.5) 		298.3
(0.7) 		127.1
(-3) 		281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 219.6
(-3)
P 		412.9
(3)
P 		245.8
(-2.2)
P 		299
(-0.5)
P 		286.4
(-0.9)
P 		262.7
(-1.7)
P 		193
B 416.6
(1)
P 		404.9
(0.7)
P 		279
(-2.3)
P 		247.2
(-3)
P 		504.4
(3)
P 		417.5
(1)
P 		257
C 564.6
(3)
P 		333
(-1)
P 		265.5
(-2.2)
P 		216.7
(-3)
P 		331.2
(-1)
P 		375.6
(-0.3)
P 		348
avr 400.3
(3) 		383.6
(2.3) 		263.4
(-2.6) 		254.3
(-3) 		374
(1.9) 		351.9
(1) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187651_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7297
Sequence Type Exemplar sequence
Representative Public ID C05D11.3 NCBI
Target Description C05D11.3 /REP_DB=WormBase Gene ID /WP=CE01133 /TR=SW:Q11183 /GB=AAB53824.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066009 NCBI Caenorhabditis elegans C05D11.3 (C05D11.3) mRNA, complete cds. 11/11 None
SNAP00000019455 ENSEMBL cdna:SNAP chromosome:CEL140:III:6432118:6432915:1 11/11 None
GENEFINDER00000019466 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6432118:6432915:1 11/11 None
C05D11.3 ENSEMBL cdna:known chromosome:CEL140:III:6432118:6432915:1 gene:C05D11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6432116-6432914(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D11.3
Entrez Gene 182257 Entrez gene
SwissProt Q11183 EMBL-EBI
WormBase CE01133 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257910_AT thioredoxin-related at
CANINE_2:CFA.19939.1.S1_S_AT similar to ATP binding protein associated with cell differentiation cfa
DROSOPHILA_2:1630705_AT dm
DROSGENOME1:153166_AT dm
CHICKEN:GGA.5770.1.S1_AT thioredoxin domain containing 9 gga
CHICKEN:GGAAFFX.11690.1.S1_S_AT thioredoxin domain containing 9 gga
HG-U95AV2:379_AT thioredoxin domain containing 9 hs
HC-G110:379_AT thioredoxin domain containing 9 hs
HG-U133_PLUS_2:211758_X_AT thioredoxin domain containing 9 hs
HG-U133A:211758_X_AT thioredoxin domain containing 9 hs
HG-U133A_2:211758_X_AT thioredoxin domain containing 9 hs
HG-U133_PLUS_2:203008_X_AT thioredoxin domain containing 9 hs
HG-U133A:203008_X_AT thioredoxin domain containing 9 hs
HG-FOCUS:203008_X_AT thioredoxin domain containing 9 hs
HG-U133A_2:203008_X_AT thioredoxin domain containing 9 hs
HU35KSUBC:RC_AA085749_AT thioredoxin domain containing 9 hs
HUGENEFL:D64158_AT thioredoxin domain containing 9 hs
U133_X3P:G5031582_3P_S_AT thioredoxin domain containing 9 hs
U133_X3P:HS2.153884.2.S1_3P_AT thioredoxin domain containing 9 hs
HG-U133_PLUS_2:1554047_AT thioredoxin domain containing 9 hs
HG-U95D:71049_AT Thioredoxin domain containing 9 hs
HG-U95D:83957_S_AT Thioredoxin domain containing 9 hs
HG-U95D:83960_R_AT Thioredoxin domain containing 9 hs
HU35KSUBD:RC_C21337_AT Thioredoxin domain containing 9 hs
MG-U74AV2:97900_AT thioredoxin domain containing 9 mm
MG-U74CV2:166178_AT thioredoxin domain containing 9 mm
MOE430A:1424512_A_AT thioredoxin domain containing 9 mm
MOUSE430A_2:1424512_A_AT thioredoxin domain containing 9 mm
MOUSE430_2:1424512_A_AT thioredoxin domain containing 9 mm
MOE430A:1436951_X_AT thioredoxin domain containing 9 mm
MOUSE430A_2:1436951_X_AT thioredoxin domain containing 9 mm
MOUSE430_2:1436951_X_AT thioredoxin domain containing 9 mm
MOE430B:1436108_AT thioredoxin domain containing 9 mm
MOUSE430_2:1436108_AT thioredoxin domain containing 9 mm
RG-U34B:RC_AI011156_AT thioredoxin domain containing 9 rn
RG-U34C:RC_AA819879_AT thioredoxin domain containing 9 rn
RAE230B:1379245_AT Thioredoxin domain containing 9 rn
RAT230_2:1379245_AT Thioredoxin domain containing 9 rn
RAE230B:1392188_AT Thioredoxin domain containing 9 rn
RAT230_2:1392188_AT Thioredoxin domain containing 9 rn
Protein Similarities
Method ID Description E-Value
blast AAB53824 Hypothetical protein C05D11.3 [Caenorhabditis elegans] ref|NP_498410.1| C05D11.3 [Caenorhabditis elegans] sp|Q11183|YPD3_CAEEL Hypothetical UPF0071 protein C05D11.3 in chromosome III 1.0E-105
blast CAE72491 Hypothetical protein CBG19670 [Caenorhabditis briggsae] 1.0E-95
blast AAH45061 Apacd-prov protein [Xenopus laevis] 7.0E-41
Sequence
Target Sequence 
>C. ELEGANS:187651_AT
ggagcagcttttacgagcagctcaagttgtcgaggaacagatcgaccaggagatgaataa
acttgagaacctagaagaagacgatcttgaggtaattcgtcgtcaacggatggaacaaat
gaagaaagctcaaaaagacagaattgagatgttgtctcatgggcacggaaaatacgagga
agttgctgacgagaaggagttcttcgaagctacaaagaaaagcgataaagttgtctgtct
tttctacttacctggaaacttccgatgcaaaattgtggataagcatttcgagatcttggc
tagaaagcatgttggaacacgattcatacatgtcaacgccgagaaggttcatttcctgac
aactcgtctcaatattcgtgtcattccaagcatcgctatcgtcgtgaagcaacaaaccgt
cgattacattcgtggatttgatgaattgggaggaaaagatgagtttaccaccgagaccat
ggaaaaccgattggctcgatctgaagtattgactgtcgagaagaagcatacagctcctgc
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCAGCTTTTACGAGCAGCTCAA 270 521 42 Antisense
AGATGTTGTCTCATGGGCACGGAAA 459 67 188 Antisense
TCTGTCTTTTCTACTTACCTGGAAA 337 607 275 Antisense
CACGATTCATACATGTCAACGCCGA 161 199 359 Antisense
GAAGGTTCATTTCCTGACAACTCGT 229 335 384 Antisense
ACAACTCGTCTCAATATTCGTGTCA 313 113 400 Antisense
TATTCGTGTCATTCCAAGCATCGCT 157 665 414 Antisense
AGCATCGCTATCGTCGTGAAGCAAC 129 79 430 Antisense
GTGAAGCAACAAACCGTCGATTACA 608 419 445 Antisense
AGATGAGTTTACCACCGAGACCATG 603 63 498 Antisense
GAGAAGAAGCATACAGCTCCTGCAA 695 391 559 Antisense
Sequence Source Affymetrix Proprietary Database