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[187649_at]

Description C05D11.5 /REP_DB=WormBase Gene ID /WP=CE01135 /TR=SW:Q11185 /GB=AAB53826.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 32      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 33      6grp_total > 21      4grp_total > 54      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 752
1 2 3 4 range
A 749.1
(3)
P 		461.7
(-0.5)
P 		346.3
(-1.9)
P 		258.7
(-3)
P 		490
B 527.9
(2.4)
P 		564.5
(3)
P 		348
(-0.5)
P 		196.4
(-3)
P 		368
C 948.8
(3)
P 		342
(-1.9)
P 		433.8
(-1.1)
P 		200.8
(-3)
P 		748
avr 741.9
(3) 		456.1
(-0.3) 		376
(-1.2) 		218.6
(-3) 		523

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2353
1 2 3 4 5 6 range
A 1066.1
(-1.3)
P 		2745
(3)
P 		2312.4
(1.9)
P 		1750
(0.5)
P 		1043
(-1.3)
P 		392.3
(-3)
P 		2353
B 1254.5
(-0.8)
P 		2509.7
(2.9)
P 		2561.4
(3)
P 		1252.5
(-0.8)
P 		1361.3
(-0.5)
P 		488
(-3)
P 		2073
C 1572.1
(0.4)
P 		2321.3
(3)
P 		2227.2
(2.7)
P 		1590
(0.4)
P 		973
(-1.8)
P 		619.9
(-3)
P 		1701
avr 1297.6
(-0.6) 		2525.3
(3) 		2367
(2.5) 		1530.8
(0.1) 		1125.8
(-1.1) 		500.1
(-3) 		2025
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 272.8
(3)
P 		100.2
(-1.4)
P 		90.5
(-1.7)
P 		37.9
(-3)
P 		235
B 168.4
(3)
P 		139.4
(1.6)
P 		80.6
(-1.2)
P 		41.8
(-3)
P 		127
C 314.1
(3)
P 		98.3
(-1.6)
P 		151.2
(-0.5)
P 		33.9
(-3)
P 		280
avr 251.8
(3) 		112.6
(-0.9) 		107.4
(-1.1) 		37.9
(-3) 		214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 881
1 2 3 4 5 6 range
A 196.5
(-2.3)
P 		976.3
(3)
P 		503.6
(-0.2)
P 		443.9
(-0.6)
P 		314.7
(-1.5)
P 		95.5
(-3)
P 		881
B 436.5
(-0.7)
P 		835.4
(3)
P 		622
(1)
P 		331.7
(-1.6)
P 		553.1
(0.4)
P 		182
(-3)
P 		653
C 582.7
(1.5)
P 		708.3
(3)
P 		566.9
(1.3)
P 		319.7
(-1.7)
P 		314.9
(-1.7)
P 		207.5
(-3)
P 		501
avr 405.2
(-0.8) 		840
(3) 		564.2
(0.6) 		365.1
(-1.2) 		394.2
(-0.9) 		161.7
(-3) 		678
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187649_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6682
Sequence Type Exemplar sequence
Representative Public ID C05D11.5 NCBI
Target Description C05D11.5 /REP_DB=WormBase Gene ID /WP=CE01135 /TR=SW:Q11185 /GB=AAB53826.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066003(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066003 NCBI Caenorhabditis elegans C05D11.5 (C05D11.5) mRNA, complete cds. 11/11 None
SNAP00000019449 ENSEMBL cdna:SNAP chromosome:CEL140:III:6410038:6411426:-1 11/11 None
GENEFINDER00000019472 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6410038:6411426:-1 11/11 None
C05D11.5 ENSEMBL cdna:known chromosome:CEL140:III:6410038:6411454:-1 gene:C05D11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6410036-6411425(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D11.5
Entrez Gene 182258 Entrez gene
SwissProt Q11185 EMBL-EBI
WormBase CE01135 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.8726.1.S1_S_AT similar to hydroxypyruvate isomerase homolog cfa
CANINE_2:CFAAFFX.8731.1.S1_S_AT similar to hydroxypyruvate isomerase homolog cfa
CANINE_2:CFAAFFX.8742.1.S1_S_AT similar to hydroxypyruvate isomerase homolog cfa
CANINE_2:CFAAFFX.8742.1.S1_X_AT similar to hydroxypyruvate isomerase homolog cfa
DROSOPHILA_2:1623102_AT GIP-like dm
DROSGENOME1:143691_AT GIP-like dm
CHICKEN:GGAAFFX.6299.1.S1_AT similar to hypothetical protein HT036 gga
HG-U133_PLUS_2:221435_X_AT hydroxypyruvate isomerase homolog (E. coli) hs
HG-U133A:221435_X_AT hydroxypyruvate isomerase homolog (E. coli) hs
HG-U133A_2:221435_X_AT hydroxypyruvate isomerase homolog (E. coli) hs
HG-U133_PLUS_2:223769_X_AT hydroxypyruvate isomerase homolog (E. coli) hs
HG-U133B:223769_X_AT hydroxypyruvate isomerase homolog (E. coli) hs
HG-U133_PLUS_2:223622_S_AT hydroxypyruvate isomerase homolog (E. coli) hs
HG-U133B:223622_S_AT hydroxypyruvate isomerase homolog (E. coli) hs
HU35KSUBC:RC_H66659_AT hydroxypyruvate isomerase homolog (E. coli) hs
U133_X3P:G13654271_3P_S_AT hydroxypyruvate isomerase homolog (E. coli) hs
U133_X3P:G12584840_3P_A_AT hydroxypyruvate isomerase homolog (E. coli) hs
U133_X3P:G12584838_3P_A_AT hydroxypyruvate isomerase homolog (E. coli) hs
U133_X3P:223769_3P_X_AT hydroxypyruvate isomerase homolog (E. coli) hs
U133_X3P:223622_3P_S_AT hydroxypyruvate isomerase homolog (E. coli) hs
HG-U95B:43474_AT hydroxypyruvate isomerase homolog (E. coli) hs
MOUSE430A_2:1425201_A_AT hydroxypyruvate isomerase homolog (E. coli) mm
MOUSE430_2:1425201_A_AT hydroxypyruvate isomerase homolog (E. coli) mm
MOE430A:1425201_A_AT hydroxypyruvate isomerase homolog (E. coli) mm
MG-U74BV2:163751_I_AT hydroxypyruvate isomerase homolog (E. coli) mm
MG-U74CV2:169116_AT hydroxypyruvate isomerase homolog (E. coli) mm
MU19KSUBB:TC34203_AT Hydroxypyruvate isomerase homolog (E. coli), mRNA (cDNA clone MGC:25684 IMAGE:4923664) mm
MU19KSUBB:TC34203_G_AT Hydroxypyruvate isomerase homolog (E. coli), mRNA (cDNA clone MGC:25684 IMAGE:4923664) mm
MU19KSUBC:TC36010_AT Hydroxypyruvate isomerase homolog (E. coli), mRNA (cDNA clone MGC:25684 IMAGE:4923664) mm
Protein Similarities
Method ID Description E-Value
blast AAB53826 Hypothetical protein C05D11.5 [Caenorhabditis elegans] ref|NP_498404.1| C05D11.5 [Caenorhabditis elegans] sp|Q11185|YPD5_CAEEL Hypothetical protein C05D11.5 in chromosome III 1.0E-151
blast CAE72485 Hypothetical protein CBG19664 [Caenorhabditis briggsae] 1.0E-102
blast ZP_00132854 COG3622: Hydroxypyruvate isomerase [Haemophilus somnus 2336] 2.0E-46
Sequence
Target Sequence 
>C. ELEGANS:187649_AT
acatactttgatcaatgcaccgcccgggaattgggatgacggatttagaggattggcttc
tttgaaatcggcgaaaaaggagtttagaaagagtttggatactgcgattgagtatgcgaa
ggctcttggatgttgtagagttcacgtaatggctggaattccgaaatcggatgatgactt
ggaaaatgctcatcagacctattctgaaaatgtgcgttttgccgccgaaaagttcaagga
gcacaagttgatatgcctcattgaaccaatcaataagtacactattcctggatatcactt
aaataattatgaagatgcaatggatgtgatccaaatggatcaatcgaataatttgaaaat
tcaatatgacacattccacgctcaacaaatcaacggacaaattggagcaattatgagaaa
gctcaaagattatattggctatattcaagtggctcaagttccaaatagaggtgcatgtga
tacacgcggagaaatcgattatcattttattttcgatgaaatccgttcgatcaatccatc
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATACTTTGATCAATGCACCGCCC 13 107 186 Antisense
TGCACCGCCCGGGAATTGGGATGAC 555 575 201 Antisense
GGATTGGCTTCTTTGAAATCGGCGA 65 509 235 Antisense
GTATGCGAAGGCTCTTGGATGTTGT 441 455 297 Antisense
GAAAATGCTCATCAGACCTATTCTG 685 353 367 Antisense
TGCGTTTTGCCGCCGAAAAGTTCAA 425 571 398 Antisense
GTTGATATGCCTCATTGAACCAATC 488 435 432 Antisense
GTACACTATTCCTGGATATCACTTA 316 461 462 Antisense
CAATATGACACATTCCACGCTCAAC 453 181 547 Antisense
GAGGTGCATGTGATACACGCGGAGA 421 401 653 Antisense
GAAATCCGTTCGATCAATCCATCAT 677 361 703 Antisense
Sequence Source Affymetrix Proprietary Database