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[187647_at]

Description C41G11.3 /REP_DB=WormBase Gene ID /WP=CE06948 /TR=SW:Q18563 /GB=AAA85745.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 38      6grp_cgc > 23      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 80.2
(3)
P 		72.4
(2.4)
A 		5.7
(-3)
A 		69.2
(2.1)
A 		75
B 106.8
(3)
P 		48.7
(-1.6)
A 		53.6
(-1.2)
A 		30.8
(-3)
A 		76
C 96.5
(3)
P 		38.1
(-2.9)
A 		39.1
(-2.8)
A 		37.6
(-3)
A 		59
avr 94.5
(3) 		53.1
(-1) 		32.8
(-3) 		45.9
(-1.7) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 142
(3)
P 		88.2
(0.4)
P 		32.4
(-2.3)
A 		21.6
(-2.8)
A 		18.2
(-3)
A 		27.8
(-2.5)
A 		124
B 66.3
(3)
M 		52.5
(1.1)
P 		33.9
(-1.3)
A 		47.1
(0.4)
A 		21.6
(-3)
A 		24.3
(-2.6)
A 		45
C 66.2
(2.1)
A 		75.2
(3)
P 		54.8
(1)
A 		36.5
(-0.7)
A 		13.2
(-3)
A 		16.1
(-2.7)
A 		62
avr 91.5
(3) 		72
(1.4) 		40.4
(-1.2) 		35.1
(-1.6) 		17.7
(-3) 		22.7
(-2.6) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 29.2
(3)
P 		15.7
(0.1)
A 		1.5
(-3)
A 		10.1
(-1.1)
A 		28
B 34.1
(3)
P 		12
(-1.8)
A 		12.4
(-1.7)
A 		6.6
(-3)
A 		28
C 31.9
(3)
P 		11
(-1.9)
A 		13.6
(-1.3)
A 		6.3
(-3)
A 		26
avr 31.7
(3) 		12.9
(-1.7) 		9.2
(-2.6) 		7.7
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 26.2
(1.8)
P 		31.4
(3)
P 		7
(-2.7)
A 		5.5
(-3)
A 		5.5
(-3)
A 		6.8
(-2.7)
A 		26
B 23.1
(3)
M 		17.5
(0.7)
P 		8.2
(-3)
A 		12.5
(-1.3)
A 		8.8
(-2.8)
A 		9.1
(-2.6)
A 		15
C 24.5
(3)
A 		22.9
(2.5)
P 		13.9
(-0.1)
A 		7.3
(-2.1)
A 		4.3
(-3)
A 		5.4
(-2.7)
A 		20
avr 24.6
(3) 		23.9
(2.8) 		9.7
(-1.9) 		8.4
(-2.3) 		6.2
(-3) 		7.1
(-2.7) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187647_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17106
Sequence Type Exemplar sequence
Representative Public ID C41G11.3 NCBI
Target Description C41G11.3 /REP_DB=WormBase Gene ID /WP=CE06948 /TR=SW:Q18563 /GB=AAA85745.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076563(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076563 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-6) (rgs-6) mRNA, complete cds. 11/11 A 
SNAP00000015676 ENSEMBL cdna:SNAP chromosome:CEL140:X:5725794:5726997:-1 9/11 None
GENEFINDER00000015679 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5725794:5728595:-1 9/11 None
C41G11.3 ENSEMBL cdna:known chromosome:CEL140:X:5720408:5728614:-1 gene:C41G11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5726020-5727217(-) 98.68 98.68
Public Domain and Genome References
Gene Title
Gene Symbol rgs-6
Ensembl C41G11.3
Entrez Gene 180840 Entrez gene
SwissProt Q18563 EMBL-EBI
WormBase CE30895 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA85744 Regulator of g protein signaling protein 6 [Caenorhabditis elegans] ref|NP_508964.2| Regulator of G protein Signaling family member (rgs-6) [Caenorhabditis elegans] sp|Q18563|RGS6_CAEEL Regulator of G-protein signaling rgs-6 0.0
blast T29512 hypothetical protein C41G11.2 - Caenorhabditis elegans 0.0
blast AAA85744 Regulator of g protein signaling protein 6 [Caenorhabditis elegans] ref|NP_508964.2| Regulator of G protein Signaling family member (rgs-6) [Caenorhabditis elegans] sp|Q18563|RGS6_CAEEL Regulator of G-protein signaling rgs-6 1.0E-146
blast CAE68793 Hypothetical protein CBG14738 [Caenorhabditis briggsae] 1.0E-142
blast CAE68794 Hypothetical protein CBG14739 [Caenorhabditis briggsae] 1.0E-130
blast AAA85744 Regulator of g protein signaling protein 6 [Caenorhabditis elegans] ref|NP_508964.2| Regulator of G protein Signaling family member (rgs-6) [Caenorhabditis elegans] sp|Q18563|RGS6_CAEEL Regulator of G-protein signaling rgs-6 1.0E-101
blast CAE68794 Hypothetical protein CBG14739 [Caenorhabditis briggsae] 6.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR000342 EMBL-EBI Regulator of G protein 3.2E-20
Pfam IPR000342 EMBL-EBI Regulator of G protein 3.2E-20
Sequence
Target Sequence 
>C. ELEGANS:187647_AT
caactctcaaccatctttcacagatgaagaactagcggcggatgatgaagataaaaatgg
gcatagccaaccaacctccctcaataatacgaacgaatttgaagcagctgcgcaacagtc
gcagcctgctccaaacgcaccagcagcgacaaaggaaaaacgtaagtcaattctttggca
cggtttggatcggttttcgcgccgattgcgacgcggtgatagcaacacggccactaattg
tgacgacgatgccgacgccagcgcgtccggctcggcggttggtggaagaggtgttgtcgg
gtcagccggatcaaaacgacgatatatcttcgcagcatcgaagcaatacagtatgccggc
tgagatgacgtctcccgtgaagaagaactcgctgtcgccgacgcatctacgacgatgtcg
acctgtggagccgaagcactgccagctgatgattggggatcaattcaatacggaaacggt
tacactcagcgatccggtaagtttctatcctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTCTCAACCATCTTTCACAGAT 312 189 366 Antisense
CCAACCTCCCTCAATAATACGAACG 534 275 436 Antisense
TGGCACGGTTTGGATCGGTTTTCGC 291 543 541 Antisense
GCGACGCGGTGATAGCAACACGGCC 6 291 573 Antisense
TAATTGTGACGACGATGCCGACGCC 567 633 600 Antisense
GTGTTGTCGGGTCAGCCGGATCAAA 450 483 656 Antisense
GTATGCCGGCTGAGATGACGTCTCC 463 455 716 Antisense
CGTGAAGAAGAACTCGCTGTCGCCG 550 245 741 Antisense
TACGACGATGTCGACCTGTGGAGCC 74 647 773 Antisense
AAACGGTTACACTCAGCGATCCGGT 172 111 839 Antisense
GCGATCCGGTAAGTTTCTATCCTGT 46 291 854 Antisense
Sequence Source Affymetrix Proprietary Database