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[187646_s_at]

Description C46C2.5 /REP_DB=WormBase Gene ID /WP=CE23598 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9U3M0 protein_id:CAB54197.1
Cluster 6grp_total > 93      4grp_total > 09      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 14.2
(-0.5)
A 		30.1
(3)
A 		2.7
(-3)
A 		6.1
(-2.3)
A 		27
B 10.7
(-0.8)
A 		4
(-2.4)
A 		26.7
(3)
A 		1.7
(-3)
A 		25
C 3
(-3)
A 		2.8
(-3)
A 		4.8
(-2.8)
A 		62.9
(3)
A 		60
avr 9.3
(-3) 		12.3
(-1.7) 		11.4
(-2.1) 		23.6
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 36
(-2.1)
A 		2.5
(-3)
A 		17.2
(-2.6)
A 		5.6
(-2.9)
A 		215.2
(3)
P 		11.6
(-2.7)
A 		213
B 7.3
(-2.8)
A 		14
(-2.6)
A 		28.2
(-2.1)
A 		1.9
(-3)
A 		180.1
(3)
P 		35
(-1.9)
P 		178
C 2.9
(-3)
A 		28.1
(-2.4)
A 		4.5
(-2.9)
A 		2.2
(-3)
A 		245
(3)
P 		39.4
(-2.1)
P 		243
avr 15.4
(-2.7) 		14.9
(-2.7) 		16.6
(-2.6) 		3.2
(-3) 		213.4
(3) 		28.7
(-2.3) 		210
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5.2
(1.7)
A 		6.5
(3)
A 		0.7
(-3)
A 		0.9
(-2.8)
A 		6
B 3.4
(0.1)
A 		1
(-2.4)
A 		6.2
(3)
A 		0.4
(-3)
A 		6
C 1
(-2.9)
A 		0.8
(-3)
A 		1.7
(-2.4)
A 		10.6
(3)
A 		10
avr 3.2
(-1) 		2.8
(-3) 		2.9
(-2.5) 		4
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 6.6
(-2.5)
A 		0.9
(-3)
A 		3.7
(-2.7)
A 		1.4
(-3)
A 		64.9
(3)
P 		2.8
(-2.8)
A 		64
B 2.5
(-2.8)
A 		4.7
(-2.7)
A 		6.8
(-2.5)
A 		0.5
(-3)
A 		73.2
(3)
P 		13
(-2)
P 		73
C 1.1
(-2.9)
A 		8.6
(-2.4)
A 		1.1
(-2.9)
A 		0.4
(-3)
A 		79.3
(3)
P 		13.2
(-2)
P 		79
avr 3.4
(-2.8) 		4.7
(-2.7) 		3.9
(-2.7) 		0.8
(-3) 		72.5
(3) 		9.7
(-2.3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187646_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9892
Sequence Type Exemplar sequence
Representative Public ID C46C2.5 NCBI
Target Description C46C2.5 /REP_DB=WormBase Gene ID /WP=CE23598 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9U3M0 protein_id:CAB54197.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069201(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069201 NCBI Caenorhabditis elegans C46C2.5 (C46C2.5) mRNA, complete cds. 11/11 A 
SNAP00000024420 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9191660:9192154:-1 11/11 None
C46C2.5 ENSEMBL cdna:known chromosome:CEL140:IV:9191660:9192601:-1 gene:C46C2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9191665-9192607(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46C2.5
Entrez Gene 177742 Entrez gene
SwissProt Q9U3M0 EMBL-EBI
WormBase CE28725 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54197 Hypothetical protein C46C2.5 [Caenorhabditis elegans] ref|NP_501602.1| C46C2.5 [Caenorhabditis elegans] 1.0E-113
blast CAB54197 Hypothetical protein C46C2.5 [Caenorhabditis elegans] ref|NP_501602.1| C46C2.5 [Caenorhabditis elegans] 2.0E-62
blast CAE69067 Hypothetical protein CBG15083 [Caenorhabditis briggsae] 2.0E-45
blast CAE69067 Hypothetical protein CBG15083 [Caenorhabditis briggsae] 4.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501602.1 1 13-35
C46C2.5 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:187646_S_AT
atctactcgacggaactgttttcataggtgataacatatacggagaagcttttaattgct
tatcaaagaaaaggatactagtgcaaataaaatataactctgaattgcaggaaaatctgg
aatcattgttcatgtcgtgtgctcgtgaaatcattctgaacaatcagtcaatcgacatac
tggaacatctcaagcctgtttcacgttgtgtcgctggaaaattggcttgctccaaaatag
acaaaaactcattcattggagcagttttcgcaggagttgacctttttgacacattttcaa
actctcgttcaattttaagtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTACTCGACGGAACTGTTTTCAT 144 33 341 Antisense
GAATCATTGTTCATGTCGTGTGCTC 3 329 460 Antisense
TGTCGTGTGCTCGTGAAATCATTCT 50 559 473 Antisense
GTCAATCGACATACTGGAACATCTC 641 463 507 Antisense
ACATCTCAAGCCTGTTTCACGTTGT 35 107 525 Antisense
CCTGTTTCACGTTGTGTCGCTGGAA 160 267 535 Antisense
GTGTCGCTGGAAAATTGGCTTGCTC 56 487 548 Antisense
GGAGCAGTTTTCGCAGGAGTTGACC 105 521 598 Antisense
GGAGTTGACCTTTTTGACACATTTT 34 517 613 Antisense
GACACATTTTCAAACTCTCGTTCAA 376 367 628 Antisense
CAAACTCTCGTTCAATTTTAAGTCA 209 187 638 Antisense
Sequence Source Affymetrix Proprietary Database