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[187645_at]

Description C46C2.5 /REP_DB=WormBase Gene ID /WP=CE23598 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9U3M0 protein_id:CAB54197.1
Cluster 6grp_total > 93      4grp_total > 10      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 0.7
(-3)
A 		3.3
(-2.5)
A 		0.5
(-3)
A 		34.6
(3)
A 		34
B 0.8
(-3)
A 		3.1
(1.6)
A 		2.3
(-0)
A 		3.8
(3)
A 		3
C 0.6
(-2.9)
A 		1
(-2.8)
A 		0.4
(-3)
A 		24.1
(3)
A 		24
avr 0.7
(-3) 		2.5
(-2.5) 		1.1
(-2.9) 		20.8
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 11.1
(-0.3)
A 		0.2
(-3)
A 		0.3
(-3)
A 		2.2
(-2.5)
A 		24.6
(3)
A 		11.2
(-0.3)
A 		24
B 0.7
(-3)
A 		2.5
(-2.3)
A 		2.6
(-2.3)
A 		0.9
(-2.9)
A 		17.2
(3)
A 		4.1
(-1.8)
A 		17
C 5.1
(-2.1)
A 		1.1
(-2.9)
A 		3.7
(-2.4)
A 		0.7
(-3)
A 		30.6
(3)
A 		0.7
(-3)
A 		30
avr 5.6
(-1.9) 		1.3
(-3) 		2.2
(-2.8) 		1.3
(-3) 		24.1
(3) 		5.3
(-1.9) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.3
(-2.8)
A 		0.7
(-2.3)
A 		0.1
(-3)
A 		5.1
(3)
A 		5
B 0.2
(-3)
A 		0.8
(3)
A 		0.5
(-0)
A 		0.8
(3)
A 		1
C 0.2
(-2.9)
A 		0.3
(-2.7)
A 		0.1
(-3)
A 		4.1
(3)
A 		4
avr 0.2
(-3) 		0.6
(-2.2) 		0.2
(-3) 		3.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.1
(-1.4)
A 		0.1
(-3)
A 		0.1
(-3)
A 		0.6
(-2.6)
A 		7.4
(3)
A 		2.7
(-0.9)
A 		7
B 0.2
(-3)
A 		0.8
(-2.5)
A 		0.6
(-2.6)
A 		0.2
(-3)
A 		7
(3)
A 		1.5
(-1.9)
A 		7
C 1.9
(-1.9)
A 		0.3
(-2.9)
A 		1
(-2.4)
A 		0.1
(-3)
A 		9.9
(3)
A 		0.2
(-2.9)
A 		10
avr 1.4
(-2.2) 		0.4
(-2.9) 		0.6
(-2.8) 		0.3
(-3) 		8.1
(3) 		1.5
(-2.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187645_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9892
Sequence Type Exemplar sequence
Representative Public ID C46C2.5 NCBI
Target Description C46C2.5 /REP_DB=WormBase Gene ID /WP=CE23598 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9U3M0 protein_id:CAB54197.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069201(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069201 NCBI Caenorhabditis elegans C46C2.5 (C46C2.5) mRNA, complete cds. 11/11 A 
C46C2.5 ENSEMBL cdna:known chromosome:CEL140:IV:9191660:9192601:-1 gene:C46C2.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024420 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9191665-9192607(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46C2.5
Entrez Gene 177742 Entrez gene
SwissProt Q9U3M0 EMBL-EBI
WormBase CE28725 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54197 Hypothetical protein C46C2.5 [Caenorhabditis elegans] ref|NP_501602.1| C46C2.5 [Caenorhabditis elegans] 1.0E-113
blast CAE69067 Hypothetical protein CBG15083 [Caenorhabditis briggsae] 2.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501602.1 1 13-35
C46C2.5 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:187645_AT
agatattccctcactattttctggtttactaaatggattatcaaaaaattgcttgactga
aacctatagtttcttgacagaattgagggaaatagagactcttcaaaattcaaagtttaa
caatgttgatgtactgtatgacaaggatctcatgaaatctctttttggagacttgaaatc
tatatctttatctataaaatcttccaactgttcaagtatgatatttgctaaatatctact
cgacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATATTCCCTCACTATTTTCTGGT 32 67 108 Antisense
TCCCTCACTATTTTCTGGTTTACTA 89 597 114 Antisense
AAAAATTGCTTGACTGAAACCTATA 164 119 151 Antisense
AAACCTATAGTTTCTTGACAGAATT 647 125 167 Antisense
GATGTACTGTATGACAAGGATCTCA 649 409 235 Antisense
CAAGGATCTCATGAAATCTCTTTTT 500 183 249 Antisense
TGAAATCTCTTTTTGGAGACTTGAA 504 571 260 Antisense
GAGACTTGAAATCTATATCTTTATC 517 393 275 Antisense
CTTTATCTATAAAATCTTCCAACTG 143 221 293 Antisense
CTTCCAACTGTTCAAGTATGATATT 107 217 308 Antisense
ATTTGCTAAATATCTACTCGACGGA 73 13 330 Antisense
Sequence Source Affymetrix Proprietary Database