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[187644_at]

Description C44B7.11 /REP_DB=WormBase Gene ID /WP=CE02539 /TR=SW:Q18600 /GB=AAA68342.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 12      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 60      6grp_total > 22      4grp_total > 61      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 374
1 2 3 4 range
A 543.1
(1.9)
P 		598.3
(3)
P 		497
(1)
P 		299.5
(-3)
P 		299
B 636.9
(3)
P 		564.9
(1.8)
P 		586.5
(2.1)
P 		289.5
(-3)
P 		347
C 608.5
(1.9)
P 		410.1
(-2)
P 		663.1
(3)
P 		361
(-3)
P 		302
avr 596.2
(3) 		524.4
(1.5) 		582.2
(2.7) 		316.7
(-3) 		280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 439
(1.3)
P 		458.4
(1.7)
P 		526
(3)
P 		323.8
(-1)
P 		222.4
(-3)
P 		224
(-3)
P 		304
B 435.5
(1.4)
P 		520
(3)
P 		440.8
(1.5)
P 		312.2
(-0.8)
P 		219.1
(-2.6)
P 		195.9
(-3)
P 		324
C 404.5
(0.6)
P 		542.7
(3)
P 		400
(0.5)
P 		196.6
(-3)
P 		211.7
(-2.7)
P 		215.8
(-2.7)
P 		346
avr 426.3
(1.4) 		507
(3) 		455.6
(2) 		277.5
(-1.7) 		217.7
(-2.9) 		211.9
(-3) 		295
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 197.7
(3)
P 		129.9
(0.4)
P 		129.9
(0.4)
P 		43.8
(-3)
P 		154
B 203.1
(3)
P 		139.5
(0.3)
P 		135.9
(0.1)
P 		61.7
(-3)
P 		141
C 201.4
(2)
P 		117.9
(-1)
P 		231.1
(3)
P 		60.9
(-3)
P 		170
avr 200.7
(3) 		129.1
(0) 		165.6
(1.5) 		55.5
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 80.9
(-1.5)
P 		163
(3)
P 		114.6
(0.3)
P 		82.1
(-1.5)
P 		67.1
(-2.3)
P 		54.5
(-3)
P 		109
B 151.5
(1.7)
P 		173.1
(3)
P 		107
(-1)
P 		82.7
(-2.4)
P 		89
(-2)
P 		73.1
(-3)
P 		100
C 149.9
(2.3)
P 		165.6
(3)
P 		101.8
(-0)
P 		39.5
(-3)
P 		68.5
(-1.6)
P 		72.2
(-1.4)
P 		126
avr 127.4
(0.6) 		167.2
(3) 		107.8
(-0.5) 		68.1
(-2.9) 		74.9
(-2.5) 		66.6
(-3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187644_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4777
Sequence Type Exemplar sequence
Representative Public ID C44B7.11 NCBI
Target Description C44B7.11 /REP_DB=WormBase Gene ID /WP=CE02539 /TR=SW:Q18600 /GB=AAA68342.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063009 NCBI Caenorhabditis elegans C44B7.11 (C44B7.11) mRNA, complete cds. 11/11 None
SNAP00000042329 ENSEMBL cdna:SNAP chromosome:CEL140:II:6894246:6897460:-1 11/11 None
GENEFINDER00000042336 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6894246:6898210:-1 11/11 None
C44B7.11 ENSEMBL cdna:known chromosome:CEL140:II:6894134:6897370:-1 gene:C44B7.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6894436-6897366(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B7.11
Entrez Gene 183431 Entrez gene
SwissProt Q18600 EMBL-EBI
WormBase CE37489 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68342 Hypothetical protein C44B7.11 [Caenorhabditis elegans] ref|NP_495410.2| C44B7.11 [Caenorhabditis elegans] sp|Q18600|YTV2_CAEEL Putative zinc metallopeptidase C44B7.11 0.0
blast CAE65988 Hypothetical protein CBG11179 [Caenorhabditis briggsae] 0.0
blast CAE67479 Hypothetical protein CBG12983 [Caenorhabditis briggsae] 1.0E-116
blast AAA62526 Hypothetical protein B0495.7 [Caenorhabditis elegans] ref|NP_495618.1| B0495.7 [Caenorhabditis elegans] sp|Q09216|YP67_CAEEL Hypothetical protein B0495.7 in chromosome II 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR007484 EMBL-EBI Peptidase M28 5.3E-5
Pfam IPR007484 EMBL-EBI Peptidase M28 5.3E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495410.2 9 13-30,275-297,318-340,355-377,389-411,415-437,449-471,486-505,517-539
C44B7.11 9 13-30,275-297,318-340,355-377,389-411,415-437,449-471,486-505,517-539
SNAP00000042329 9 41-60,384-406,419-441,456-478,490-512,516-538,550-572,587-606,618-640
GENEFINDER00000042336 9 43-62,386-408,421-443,458-480,492-514,518-540,552-574,589-608,620-642
Sequence
Target Sequence 
>C. ELEGANS:187644_AT
tatacgtattctcaagtttctggccatctccatacagatttgataatgtttatccaacag
caaaacgaactcaatttttccatgtcaatcaaatgctttatgatagaaacggtcaaattt
cggtaaatgatacaagattttatgcaatttcgcatgattatcgcggagcagaagatattc
cgtttgtcaaaaaagatccagaatacacagggcttcaatgtcattatgaaaataacccat
ggtgtgaaactccgttcttgttcccaacgaagggtagactgaatgaaagaaatattcgtg
tgagatctgtagacgaacgcttgaagttcaaacatcccgtgaaaatattgggaatatcta
aaaggcacggagtagattcaaaagatggaaaaggaaacatcgagtatagcttctcagtaa
ttggtactggacaaatatctgtttacattattcctgacactacttggctgatcacaaata
cttccgtaactcaaccaaaaacaccacaagagaacatgtttttatactacacttgctcta
ctccgaataata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATACGTATTCTCAAGTTTCTGGCC 191 659 1619 Antisense
TTTCTGGCCATCTCCATACAGATTT 334 671 1635 Antisense
AACGAACTCAATTTTTCCATGTCAA 159 145 1682 Antisense
GAATACACAGGGCTTCAATGTCATT 19 327 1819 Antisense
AACCCATGGTGTGAAACTCCGTTCT 417 143 1852 Antisense
GTGAGATCTGTAGACGAACGCTTGA 6 485 1918 Antisense
GAAACATCGAGTATAGCTTCTCAGT 236 357 2012 Antisense
TATTCCTGACACTACTTGGCTGATC 487 663 2067 Antisense
GGCTGATCACAAATACTTCCGTAAC 112 541 2084 Antisense
GTTTTTATACTACACTTGCTCTACT 45 449 2136 Antisense
TACACTTGCTCTACTCCGAATAATA 461 643 2146 Antisense
Sequence Source Affymetrix Proprietary Database