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[187642_s_at]

Description B0511.10 /REP_DB=WormBase Gene ID /WP=CE17349 /TR=SW:O61820 /GB=AAC17647.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 06      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_total > 16      4grp_total > 42      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 335
1 2 3 4 range
A 325.7
(-3)
P 		349.5
(-2.4)
P 		430.5
(-0.4)
P 		566.4
(3)
P 		241
B 305.6
(-3)
P 		466.8
(3)
P 		388.5
(0.1)
P 		319.5
(-2.5)
P 		161
C 314.5
(-0.6)
P 		441.7
(3)
P 		342.3
(0.2)
P 		231.2
(-3)
P 		211
avr 315.3
(-3) 		419.3
(3) 		387.1
(1.1) 		372.4
(0.3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 281.5
(3)
P 		157.9
(-2.4)
P 		215.2
(0.1)
P 		144
(-3)
A 		172.7
(-1.7)
M 		162.9
(-2.2)
M 		138
B 241.1
(2.1)
P 		259.8
(3)
P 		166.4
(-1.3)
P 		129.6
(-3)
P 		143.9
(-2.3)
P 		211.7
(0.8)
M 		130
C 287.2
(3)
P 		223.5
(0.3)
P 		165.2
(-2.1)
P 		207.3
(-0.3)
P 		143.5
(-3)
P 		148.1
(-2.8)
P 		144
avr 269.9
(3) 		213.7
(0.1) 		182.3
(-1.5) 		160.3
(-2.6) 		153.4
(-3) 		174.2
(-1.9) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 118.6
(3)
P 		75.9
(-3)
P 		112.6
(2.2)
P 		82.9
(-2)
P 		43
B 97.4
(0.7)
P 		115.3
(3)
P 		90
(-0.2)
P 		68.1
(-3)
P 		47
C 104.1
(1.4)
P 		127
(3)
P 		119.3
(2.5)
P 		39
(-3)
P 		88
avr 106.7
(2.9) 		106.1
(2.8) 		107.3
(3) 		63.3
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 51.9
(1.7)
P 		56.1
(3)
P 		46.9
(0.2)
P 		36.5
(-3)
A 		52.1
(1.8)
M 		39.7
(-2)
M 		20
B 83.9
(2.7)
P 		86.5
(3)
P 		40.4
(-2.3)
P 		34.3
(-3)
P 		58.5
(-0.2)
P 		79
(2.1)
M 		52
C 106.5
(3)
P 		68.2
(-0.5)
P 		42.1
(-3)
P 		41.7
(-3)
P 		46.4
(-2.6)
P 		49.6
(-2.3)
P 		65
avr 80.8
(3) 		70.3
(1.5) 		43.1
(-2.2) 		37.5
(-3) 		52.3
(-0.9) 		56.1
(-0.4) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187642_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1069
Sequence Type Exemplar sequence
Representative Public ID B0511.10 NCBI
Target Description B0511.10 /REP_DB=WormBase Gene ID /WP=CE17349 /TR=SW:O61820 /GB=AAC17647.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060384(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060384 NCBI Caenorhabditis elegans Eukaryotic Initiation Factor family member (eif-3.E) (eif-3.E) mRNA, complete cds. 11/11 None
SNAP00000031159 ENSEMBL cdna:SNAP chromosome:CEL140:I:10648929:10650396:-1 11/11 None
GENEFINDER00000031180 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10648929:10650396:-1 11/11 None
B0511.10 ENSEMBL cdna:known chromosome:CEL140:I:10648631:10650402:-1 gene:B0511.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10648859-10650327(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol eif-3.E
Ensembl B0511.10
Entrez Gene 172959 Entrez gene
SwissProt O61820 EMBL-EBI
WormBase CE17349 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251628_AT eukaryotic translation initiation factor 3E / eIF3e (TIF3E1) at
CANINE:1603359_AT similar to eukaryotic translation initiation factor 3, subunit 6 (predicted) cfa
CANINE:1590286_AT similar to eukaryotic translation initiation factor 3, subunit 6 (predicted) cfa
CANINE_2:CFA.14462.2.S1_S_AT similar to eukaryotic translation initiation factor 3, subunit 6 (predicted) cfa
CANINE_2:CFAAFFX.1984.1.S1_S_AT similar to eukaryotic translation initiation factor 3, subunit 6 (predicted) cfa
DROSOPHILA_2:1640174_AT Int6 homologue dm
DROSGENOME1:153110_AT Int6 homologue dm
CHICKEN:GGAAFFX.11932.1.S1_S_AT eukaryotic translation initiation factor 3, subunit 6 48kDa gga
CHICKEN:GGA.4804.1.S1_AT Eukaryotic translation initiation factor 3, subunit 6 48kDa gga
HG-U95AV2:38681_AT eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HG-U133A:208697_S_AT eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HG-U133_PLUS_2:208697_S_AT eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HG-U133A_2:208697_S_AT eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HG-FOCUS:208697_S_AT eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HU35KSUBA:R56183_S_AT eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HU35KSUBC:RC_R61297_S_AT eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HUGENEFL:U62962_AT eukaryotic translation initiation factor 3, subunit 6 48kDa hs
U133_X3P:G12653884_3P_S_AT eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HG-U95B:43843_S_AT eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HG-U133_PLUS_2:235429_AT Eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HG-U133B:235429_AT Eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HG-U133_PLUS_2:236989_AT Eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HG-U133B:236989_AT Eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HG-U95B:59337_AT Eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HG-U95C:61054_AT Eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HG-U95D:78729_AT Eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HU35KSUBB:RC_AA069547_AT Eukaryotic translation initiation factor 3, subunit 6 48kDa hs
HU35KSUBD:RC_N21321_I_AT Eukaryotic translation initiation factor 3, subunit 6 48kDa hs
U133_X3P:HS.161623.0.A1_3P_AT Eukaryotic translation initiation factor 3, subunit 6 48kDa hs
U133_X3P:HS.293171.0.A1_3P_AT Eukaryotic translation initiation factor 3, subunit 6 48kDa hs
MOE430A:1434523_X_AT eukaryotic translation initiation factor 3, subunit 6 mm
MOUSE430A_2:1434523_X_AT eukaryotic translation initiation factor 3, subunit 6 mm
MOUSE430_2:1434523_X_AT eukaryotic translation initiation factor 3, subunit 6 mm
MOUSE430A_2:1439268_X_AT eukaryotic translation initiation factor 3, subunit 6 mm
MOE430A:1439268_X_AT eukaryotic translation initiation factor 3, subunit 6 mm
MOUSE430_2:1439268_X_AT eukaryotic translation initiation factor 3, subunit 6 mm
MU11KSUBA:L35556_S_AT eukaryotic translation initiation factor 3, subunit 6 mm
MG-U74AV2:160554_AT eukaryotic translation initiation factor 3, subunit 6 mm
MOE430A:1460432_A_AT eukaryotic translation initiation factor 3, subunit 6 mm
MOUSE430A_2:1460432_A_AT eukaryotic translation initiation factor 3, subunit 6 mm
MOUSE430_2:1460432_A_AT eukaryotic translation initiation factor 3, subunit 6 mm
MG-U74AV2:101695_AT Eukaryotic translation initiation factor 3, subunit 6, mRNA (cDNA clone MGC:36795 IMAGE:3988386) mm
MOUSE430A_2:1419822_AT Eukaryotic translation initiation factor 3, subunit 6, mRNA (cDNA clone MGC:36795 IMAGE:3988386) mm
MOE430A:1419822_AT Eukaryotic translation initiation factor 3, subunit 6, mRNA (cDNA clone MGC:36795 IMAGE:3988386) mm
MOUSE430_2:1419822_AT Eukaryotic translation initiation factor 3, subunit 6, mRNA (cDNA clone MGC:36795 IMAGE:3988386) mm
RG-U34C:RC_AI237620_AT eukaryotic translation initiation factor 3, subunit 6 (predicted) rn
RAE230A:1371973_AT eukaryotic translation initiation factor 3, subunit 6 (predicted) rn
RAT230_2:1371973_AT eukaryotic translation initiation factor 3, subunit 6 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC17647 Eukaryotic initiation factor protein 3.E [Caenorhabditis elegans] ref|NP_492785.1| Eukaryotic Initiation Factor family member (eif-3.E) [Caenorhabditis elegans] sp|O61820|IF36_CAEEL Probable eukaryotic translation initiation factor 3 subunit 6 (eIF-3 p48) (eIF3e) 0.0
blast CAE67050 Hypothetical protein CBG12457 [Caenorhabditis briggsae] 1.0E-177
blast XP_686977 PREDICTED: similar to eukaryotic translation initiation factor 3, subunit 6 isoform 1 [Danio rerio] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR000717 EMBL-EBI Proteasome component region PCI 5.5E-25
Sequence
Target Sequence 
>C. ELEGANS:187642_S_AT
ccaagttttggcgccacatttgctccgctatctggctgttgccgttgttaccagcaaaag
ccgccagaagaacagcttgaaagatttggtgaaggtcattgacatcgaacgccatagtta
caaggatcccgtcactgatttcctcacctgtctctacatcaaatatgatttcgacgaggc
tcaagagatgcttcaaaagtgcgaagaggttctctccaatgatttcttcctgactgctgt
ccttggagatttccgcgagtctgcacgccttctcattttcgagatgttctgccgcattca
tcagtgcattaccatagaaatgctagcacgacgattgaatatgagccaagaggaagctga
acgctggattgttgacttgatcagaacgtatcgtatcgaaggagctaaaattgacagcaa
gttgggacaagtggtgatgggtgtcaaatccgtcagcatccacgagcaagtcatggaaaa
cacgaagagattgaccctccgcgctcaacaaatcgcccttcaattggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAGTTTTGGCGCCACATTTGCTC 99 273 750 Antisense
GCTATCTGGCTGTTGCCGTTGTTAC 141 303 776 Antisense
GCCGTTGTTACCAGCAAAAGCCGCC 24 285 790 Antisense
GCCATAGTTACAAGGATCCCGTCAC 159 253 860 Antisense
CCTCACCTGTCTCTACATCAAATAT 460 267 891 Antisense
TCTCCAATGATTTCTTCCTGACTGC 662 609 962 Antisense
TGCTGTCCTTGGAGATTTCCGCGAG 236 581 984 Antisense
CGAGATGTTCTGCCGCATTCATCAG 95 251 1029 Antisense
GGTGATGGGTGTCAAATCCGTCAGC 659 499 1182 Antisense
AACACGAAGAGATTGACCCTCCGCG 602 133 1228 Antisense
TCAACAAATCGCCCTTCAATTGGAA 270 629 1254 Antisense
Sequence Source Affymetrix Proprietary Database