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[187641_at]

Description EEED8.11 /REP_DB=WormBase Gene ID /WP=CE01884 /TR=SW:Q09300 /GB=AAC46771.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 56      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.1
(-1.7)
A 		8.3
(2.9)
A 		2.9
(-3)
A 		8.4
(3)
A 		6
B 6.1
(-0.5)
A 		6.9
(0.1)
A 		11.2
(3)
A 		2.4
(-3)
A 		9
C 7.1
(1.5)
A 		4.6
(-2.4)
A 		8.1
(3)
A 		4.2
(-3)
A 		4
avr 5.8
(-1) 		6.6
(1) 		7.4
(3) 		5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 6.8
(3)
A 		2.2
(-3)
A 		2.9
(-2.1)
A 		4.4
(-0.1)
A 		4.6
(0.1)
A 		3.6
(-1.2)
A 		5
B 5.6
(3)
A 		2.2
(-2.8)
A 		3.4
(-0.8)
A 		2.2
(-2.8)
A 		2.3
(-2.7)
A 		2.1
(-3)
A 		4
C 2.8
(-2.6)
A 		7.3
(3)
A 		2.5
(-3)
A 		4.5
(-0.5)
A 		3.1
(-2.3)
A 		5.1
(0.3)
A 		5
avr 5.1
(3) 		3.9
(-0.3) 		2.9
(-3) 		3.7
(-0.8) 		3.3
(-1.9) 		3.6
(-1.1) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.5
(1.2)
A 		1.8
(3)
A 		0.8
(-3)
A 		1.2
(-0.6)
A 		1
B 1.9
(1)
A 		1.7
(0.4)
A 		2.6
(3)
A 		0.5
(-3)
A 		2
C 2.3
(1.6)
A 		1.3
(-1.3)
A 		2.8
(3)
A 		0.7
(-3)
A 		2
avr 1.9
(2.1) 		1.6
(0.7) 		2.1
(3) 		0.8
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.2
(1.5)
A 		0.8
(-1.5)
A 		0.6
(-3)
A 		1.1
(0.8)
A 		1.4
(3)
A 		0.9
(-0.8)
A 		1
B 1.9
(3)
A 		0.7
(-2.5)
A 		0.8
(-2.1)
A 		0.6
(-3)
A 		0.9
(-1.6)
A 		0.8
(-2.1)
A 		1
C 1
(-1.5)
A 		2.2
(3)
A 		0.6
(-3)
A 		0.9
(-1.9)
A 		1
(-1.5)
A 		1.7
(1.1)
A 		2
avr 1.4
(3) 		1.2
(1.3) 		0.7
(-3) 		0.9
(-1.3) 		1.1
(0.4) 		1.1
(0.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5289
Sequence Type Exemplar sequence
Representative Public ID EEED8.11 NCBI
Target Description EEED8.11 /REP_DB=WormBase Gene ID /WP=CE01884 /TR=SW:Q09300 /GB=AAC46771.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062619(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062619 NCBI Caenorhabditis elegans EEED8.11 (EEED8.11) mRNA, complete cds. 11/11 None
SNAP00000023171 ENSEMBL cdna:SNAP chromosome:CEL140:II:5405789:5407596:-1 11/11 None
GENEFINDER00000023186 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5405789:5407596:-1 11/11 None
EEED8.11 ENSEMBL cdna:known chromosome:CEL140:II:5405789:5407596:-1 gene:EEED8.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5405786-5407594(-) 92.24 100.0
Public Domain and Genome References
Gene Title
Ensembl EEED8.11
Entrez Gene 184044 Entrez gene
SwissProt Q09300 EMBL-EBI
WormBase CE01884 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46771 Hypothetical protein EEED8.11 [Caenorhabditis elegans] ref|NP_495020.1| EEED8.11 [Caenorhabditis elegans] sp|Q09300|YQOB_CAEEL Hypothetical protein EEED8.11 in chromosome II precursor 1.0E-150
blast CAE59096 Hypothetical protein CBG02388 [Caenorhabditis briggsae] 2.0E-56
blast CAB03841 Hypothetical protein C04H5.2 [Caenorhabditis elegans] ref|NP_497022.1| C04H5.2 [Caenorhabditis elegans] 4.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495020.1 1 7-29
EEED8.11 1 7-29
SNAP00000023171 1 7-29
GENEFINDER00000023186 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:187641_AT
aggatacacaagcttccttcgtactcctgctgctgacaactcgttcacttctgaatggtg
catgcaattgatatggtccccaagacaaccaatgccgatcaataatgcatctgctctttg
ccaggcttctaacactgaagcagttgtaactaccttcgccaacgaggaggagctcaatgt
gttctctttacaaatggcacaacagttcgatcgtgttggaccggcaactcgtggcgctat
tgctgtcgacggaagacgtattgcagcatgtgtttcaagagatcgaggaattcttgacag
tgaggaatgcaatggtacaaattcattcgtaatggttgataagcatacctcaccaggttt
tacttggtctaaatgggctacaaatgagccatctgcaaatgcttggacatatgacatcga
acaatgtatacaatttaccgtctacccagcgctcacaggaccaggggataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGATACACAAGCTTCCTTCGTACT 484 57 327 Antisense
GACAACTCGTTCACTTCTGAATGGT 637 365 361 Antisense
GCCGATCAATAATGCATCTGCTCTT 642 283 420 Antisense
TGCTCTTTGCCAGGCTTCTAACACT 206 581 438 Antisense
AGCAGTTGTAACTACCTTCGCCAAC 328 77 465 Antisense
GGAGCTCAATGTGTTCTCTTTACAA 587 521 495 Antisense
CAGTTCGATCGTGTTGGACCGGCAA 451 205 529 Antisense
GGCGCTATTGCTGTCGACGGAAGAC 684 541 559 Antisense
GGTTGATAAGCATACCTCACCAGGT 675 507 660 Antisense
TGTATACAATTTACCGTCTACCCAG 696 559 751 Antisense
CAGCGCTCACAGGACCAGGGGATAA 203 203 773 Antisense
Sequence Source Affymetrix Proprietary Database