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[187640_s_at]

Description E04D5.1 /REP_DB=WormBase Gene ID /WP=CE03122 /CHR=2 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q19052 protein_id:CAA91279.1
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 49      4grp_high_8_8 > 05      6grp_highest_nonorm > 85      6grp_total > 49      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1241
1 2 3 4 range
A 789.7
(-1.6)
P 		734.6
(-1.9)
P 		507.6
(-3)
A 		1748.3
(3)
P 		1241
B 927.1
(0)
P 		576.2
(-3)
P 		672.2
(-2.2)
P 		1273.8
(3)
P 		698
C 770.2
(-2.1)
P 		686.5
(-3)
P 		699.8
(-2.9)
P 		1262.3
(3)
P 		576
avr 829
(-1.5) 		665.8
(-2.7) 		626.5
(-3) 		1428.1
(3) 		802

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 675
1 2 3 4 5 6 range
A 1083.7
(2.9)
P 		702.1
(-0.7)
P 		448.5
(-3)
P 		904.1
(1.2)
P 		745.1
(-0.3)
P 		1099.6
(3)
P 		651
B 867.1
(2.7)
P 		643.9
(-3)
P 		700
(-1.6)
P 		768.1
(0.2)
P 		669.6
(-2.3)
P 		878.6
(3)
P 		235
C 1123.6
(3)
P 		607.8
(-3)
P 		828.7
(-0.4)
P 		742.1
(-1.4)
P 		781.4
(-1)
P 		915.5
(0.6)
P 		516
avr 1024.8
(3) 		651.3
(-3) 		659.1
(-2.9) 		804.8
(-0.5) 		732
(-1.7) 		964.6
(2) 		374
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 287.5
(3)
P 		159.5
(-2)
P 		132.7
(-3)
A 		255.9
(1.8)
P 		155
B 295.7
(3)
P 		142.3
(-3)
P 		155.8
(-2.5)
P 		271.5
(2.1)
P 		153
C 255
(3)
P 		197.4
(-3)
P 		243.9
(1.8)
P 		212.9
(-1.4)
P 		58
avr 279.4
(3) 		166.4
(-3) 		177.5
(-2.4) 		246.8
(1.3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 199.8
(0.6)
P 		249.7
(2.4)
P 		97.7
(-3)
P 		229.3
(1.6)
P 		224.8
(1.5)
P 		267.7
(3)
P 		170
B 301.7
(2)
P 		214.3
(-1.3)
P 		170
(-3)
P 		203.4
(-1.7)
P 		272
(0.9)
P 		327.6
(3)
P 		158
C 416.5
(3)
P 		185.5
(-2.2)
P 		210.9
(-1.6)
P 		149.2
(-3)
P 		252.9
(-0.7)
P 		306.5
(0.5)
P 		267
avr 306
(3) 		216.5
(-0.7) 		159.5
(-3) 		194
(-1.6) 		249.9
(0.7) 		300.6
(2.8) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187640_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3481
Sequence Type Exemplar sequence
Representative Public ID E04D5.1 NCBI
Target Description E04D5.1 /REP_DB=WormBase Gene ID /WP=CE03122 /CHR=2 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q19052 protein_id:CAA91279.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063838(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063838 NCBI Caenorhabditis elegans E04D5.1a (E04D5.1) mRNA, complete cds. 11/11 None
SNAP00000023765 ENSEMBL cdna:SNAP chromosome:CEL140:II:10416747:10418847:1 11/11 None
GENEFINDER00000023770 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10416599:10418847:1 11/11 None
E04D5.1a.2 ENSEMBL cdna:known chromosome:CEL140:II:10416714:10419122:1 gene:E04D5.1 11/11 None
E04D5.1a.1 ENSEMBL cdna:known chromosome:CEL140:II:10416716:10419147:1 gene:E04D5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174606 2 1 NM_063838 187640_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10416599-10418844(+) 100.0 100.0
Public Domain and Genome References
Ensembl E04D5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91279 Hypothetical protein E04D5.1a [Caenorhabditis elegans] ref|NP_496239.2| E04D5.1a [Caenorhabditis elegans] 0.0
blast CAE59685 Hypothetical protein CBG03108 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187640_S_AT
tacaactcttttcgattgggctccagatggtcaacattttgttacatgcaccactgctcc
aaggcttcgtatagataacagttaccgcttctggcattacacgggtcgaatgcttgctga
aactcacttcgagtctccaaaagagctgtgggaagttcgctggcgtccaatgactggata
caacaagtttgccatcaaagagctaaccaagacggacaaaatggccgctggcttgccaat
tcgaaagaaggatgcatctcatccactgaataatgttccagcaggagcagttcgtcaggc
tggtgcctacattccacctcatctcaggaaaccgctag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAACTCTTTTCGATTGGGCTCCA 548 641 1245 Antisense
ATTTTGTTACATGCACCACTGCTCC 31 15 1280 Antisense
CACTGCTCCAAGGCTTCGTATAGAT 193 199 1296 Antisense
AACAGTTACCGCTTCTGGCATTACA 414 137 1321 Antisense
TACACGGGTCGAATGCTTGCTGAAA 676 641 1342 Antisense
GCTGAAACTCACTTCGAGTCTCCAA 175 297 1360 Antisense
GAGCTGTGGGAAGTTCGCTGGCGTC 184 387 1387 Antisense
AAAATGGCCGCTGGCTTGCCAATTC 221 133 1462 Antisense
GTTCCAGCAGGAGCAGTTCGTCAGG 156 441 1519 Antisense
GTTCGTCAGGCTGGTGCCTACATTC 60 439 1534 Antisense
CCACCTCATCTCAGGAAACCGCTAG 647 273 1558 Antisense
Sequence Source Affymetrix Proprietary Database