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[187639_at]

Description F23F12.4 /REP_DB=WormBase Gene ID /WP=CE01251 /TR=SW:P46500 /GB=AAA20606.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 43      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 6.2
(-3)
A 		22.8
(3)
A 		14.6
(0)
A 		10.3
(-1.5)
A 		17
B 8.5
(-1.6)
A 		29.3
(3)
A 		4.9
(-2.4)
A 		2.4
(-3)
A 		27
C 5.7
(-1.8)
A 		5.2
(-3)
A 		7.6
(3)
A 		5.4
(-2.5)
A 		2
avr 6.8
(-2.6) 		19.1
(3) 		9
(-1.6) 		6
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 3.4
(-3)
A 		5.4
(-2.7)
A 		38.9
(3)
A 		4.3
(-2.8)
A 		8.5
(-2.1)
A 		8.5
(-2.1)
A 		36
B 22.2
(3)
A 		6
(-2.2)
A 		10.3
(-0.8)
A 		5.6
(-2.3)
A 		3.5
(-3)
A 		12.5
(-0.1)
A 		19
C 4.4
(-2.5)
A 		17.9
(3)
A 		4.9
(-2.3)
A 		3.4
(-3)
A 		3.3
(-3)
A 		9.6
(-0.4)
A 		15
avr 10
(-0.5) 		9.8
(-0.6) 		18
(3) 		4.4
(-3) 		5.1
(-2.7) 		10.2
(-0.4) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.3
(-1.6)
A 		4.9
(3)
A 		3.8
(1.1)
A 		1.5
(-3)
A 		3
B 2.7
(-1)
A 		7.2
(3)
A 		1.1
(-2.5)
A 		0.5
(-3)
A 		7
C 1.9
(0.3)
A 		1.5
(-1)
A 		2.7
(3)
A 		0.9
(-3)
A 		2
avr 2.3
(-0.8) 		4.5
(3) 		2.5
(-0.4) 		1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.9
(-2)
A 		8.5
(3)
A 		1.1
(-2.6)
A 		2.6
(-1.5)
A 		2.1
(-1.9)
A 		8
B 7.7
(3)
A 		2
(-2.4)
A 		2.5
(-2)
A 		1.5
(-2.9)
A 		1.4
(-3)
A 		4.7
(0.1)
A 		6
C 1.6
(-1.9)
A 		5.5
(3)
A 		1.3
(-2.3)
A 		0.7
(-3)
A 		1.1
(-2.5)
A 		3.2
(0.1)
A 		5
avr 3.3
(1.4) 		3.1
(1) 		4.1
(3) 		1.1
(-3) 		1.7
(-1.8) 		3.3
(1.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187639_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6879
Sequence Type Exemplar sequence
Representative Public ID F23F12.4 NCBI
Target Description F23F12.4 /REP_DB=WormBase Gene ID /WP=CE01251 /TR=SW:P46500 /GB=AAA20606.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066031 NCBI Caenorhabditis elegans F23F12.4 (F23F12.4) mRNA, complete cds. 11/11 None
SNAP00000039905 ENSEMBL cdna:SNAP chromosome:CEL140:III:6498579:6499958:1 11/11 None
GENEFINDER00000039912 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6498579:6499997:1 11/11 None
F23F12.4 ENSEMBL cdna:known chromosome:CEL140:III:6498579:6499958:1 gene:F23F12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6498577-6499957(+) 99.9 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-15
Ensembl F23F12.4
Entrez Gene 184905 Entrez gene
SwissProt P46500 EMBL-EBI
WormBase CE01251 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498432 F23F12.4 [Caenorhabditis elegans] gb|AAA20606.1| Hypothetical protein F23F12.4 [Caenorhabditis elegans] sp|P46500|YLX4_CAEEL Hypothetical protein F23F12.4 in chromosome III 0.0
Sequence
Target Sequence 
>C. ELEGANS:187639_AT
gactatctccgatcagtgttcaatgtgaaagaagtttcagtcagcttttctattgatgag
aaatatgatgctgtggagttcttgaagtcggttaaaaatcgaggagttcaactcaaaaat
gtgaatattactggctttgaagtaacgttggaagcggaggcttataaaaatctccttaat
gaatgtacagaaacatctgaactcaacgttgcccctcacgtaaactggggatttgagtat
cctgtttcaaacttttccaacttttgccaaaagtttttgacaattgagcatgctcattgg
gtgactgttcatcatttgaaatctttgagaaactgtgcgtctgtaactcttaacaattca
aagttgacaaatcagaacttgaattggtttcttcgagaatggatggaaatgagcggagct
tcgttgcgaaacgtggatttggaagttaaacaactcgatttaccacggattattaatgga
ttgaaatggacaataaaggaaggaattatctcgggattcggaggattccaaaaactacca
ccaggagattgttttgagattcaacgaattgacggagtcaaagcgacaatttctcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTATCTCCGATCAGTGTTCAATG 39 373 421 Antisense
GAAGTTTCAGTCAGCTTTTCTATTG 348 337 451 Antisense
AAACATCTGAACTCAACGTTGCCCC 82 129 611 Antisense
GTTGCCCCTCACGTAAACTGGGGAT 278 439 628 Antisense
GAGCATGCTCATTGGGTGACTGTTC 329 389 706 Antisense
GAAACTGTGCGTCTGTAACTCTTAA 312 357 749 Antisense
AATGAGCGGAGCTTCGTTGCGAAAC 301 163 828 Antisense
AACAACTCGATTTACCACGGATTAT 424 133 869 Antisense
GGAGGATTCCAAAAACTACCACCAG 642 515 940 Antisense
CTACCACCAGGAGATTGTTTTGAGA 173 225 955 Antisense
GGAGTCAAAGCGACAATTTCTCGAA 498 517 994 Antisense
Sequence Source Affymetrix Proprietary Database