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[187638_at]

Description ZK1236.5 /REP_DB=WormBase Gene ID /WP=CE00382 /TR=SW:P34621 /GB=AAA28190.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 30      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 75      6grp_total > 43      4grp_total > 57      6grp_highest_sub > 03      6grp_high1_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 902
1 2 3 4 range
A 1024.1
(-3)
P 		1658.3
(3)
P 		1457.3
(1.1)
P 		1081.5
(-2.5)
P 		634
B 1187.7
(-1.8)
P 		1659.6
(1.3)
P 		1914.1
(3)
P 		1011.8
(-3)
P 		902
C 1154.6
(-2)
P 		1695.6
(3)
P 		1679.3
(2.9)
P 		1040.6
(-3)
P 		655
avr 1122.1
(-2.3) 		1671.2
(2.9) 		1683.6
(3) 		1044.6
(-3) 		639

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 898
1 2 3 4 5 6 range
A 871.5
(-1.6)
P 		1095.3
(-0.1)
P 		1565.5
(3)
P 		956.2
(-1.1)
P 		667.2
(-3)
P 		833.4
(-1.9)
P 		898
B 1048.5
(0.3)
P 		953.7
(-1.3)
P 		1211.7
(3)
P 		873.1
(-2.6)
P 		848.7
(-3)
P 		941.9
(-1.5)
P 		363
C 1043.7
(2.2)
P 		855.9
(-3)
P 		1039.3
(2.1)
P 		1037.3
(2)
P 		1015
(1.4)
P 		1072.3
(3)
P 		216
avr 987.9
(-1) 		968.3
(-1.3) 		1272.2
(3) 		955.5
(-1.4) 		843.6
(-3) 		949.2
(-1.5) 		429
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 427
1 2 3 4 range
A 372.9
(2.8)
P 		360
(2.4)
P 		381
(3)
P 		158.3
(-3)
P 		223
B 378.8
(1.3)
P 		409.9
(2.1)
P 		443.5
(3)
P 		215.6
(-3)
P 		228
C 382.2
(0)
P 		487.5
(1.6)
P 		585.3
(3)
P 		175.5
(-3)
P 		410
avr 378
(1.1) 		419.1
(1.9) 		469.9
(3) 		183.1
(-3) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 160.7
(-3)
P 		389.5
(3)
P 		340.9
(1.7)
P 		242.5
(-0.9)
P 		201.3
(-1.9)
P 		202.9
(-1.9)
P 		229
B 364.8
(3)
P 		317.5
(0.9)
P 		294.2
(-0.2)
P 		231.3
(-3)
P 		344.8
(2.1)
P 		351.2
(2.4)
P 		134
C 386.8
(3)
P 		261.2
(-1.2)
P 		264.5
(-1.1)
P 		208.6
(-3)
P 		328.4
(1)
P 		359
(2.1)
P 		178
avr 304.1
(1.8) 		322.7
(3) 		299.9
(1.6) 		227.5
(-3) 		291.5
(1) 		304.4
(1.8) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187638_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7875
Sequence Type Exemplar sequence
Representative Public ID ZK1236.5 NCBI
Target Description ZK1236.5 /REP_DB=WormBase Gene ID /WP=CE00382 /TR=SW:P34621 /GB=AAA28190.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027818
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000024919 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8431584:8433305:-1 None
SNAP00000024912 ENSEMBL cdna:SNAP chromosome:CEL140:III:8432540:8433305:-1 None
ZK1236.5a ENSEMBL cdna:known chromosome:CEL140:III:8431584:8433305:-1 gene:ZK1236.5 None
NM_001027818 NCBI Caenorhabditis elegans ZK1236.5a (ZK1236.5) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027819 8/11 Cross Hyb Matching Probes None
SNAP00000024911 8/11 Cross Hyb Matching Probes None
ZK1236.5b 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8431579-8433301(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1236.5
Entrez Gene 191537 Entrez gene
WormBase CE38925 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022989 ZK1236.5a [Caenorhabditis elegans] 1.0E-171
blast AAZ32790 Hypothetical protein ZK1236.9 [Caenorhabditis elegans] 1.0E-103
blast NP_001022989 ZK1236.5a [Caenorhabditis elegans] 1.0E-84
blast AAZ32790 Hypothetical protein ZK1236.9 [Caenorhabditis elegans] 3.0E-84
blast AAZ32789 Hypothetical protein ZK1236.5 [Caenorhabditis elegans] sp|P34621|YO85_CAEEL Hypothetical protein ZK1236.5 in chromosome III 2.0E-45
Sequence
Target Sequence 
>C. ELEGANS:187638_AT
aagttggtattggctgtcatctctcaaaatatgcaattatcccgcgctctatatcgaaat
ctcaacacacgtcattggaatcgtcgtatttgggaggtcggataccgaggaccgattctt
cctcaacaaaaagccaccggacgtccagactatccagtttccgcaaatcgcgtcaatatt
ctacgggagaggcttgcagagagcaaattgtgatgaatcttctcactcgcccgtattcga
cagcgaactgacgtatctggaaactgaaaagaatgtgaaatcgttggaagaactgcgagc
aaaagaatacaaaaagcttgatgaacagcgaatgcccggaaaaccaaaaaatacggaagg
ttccaagtcgactatcaggaagaaagctaatgttggaaatcttcttcatacccacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTGGTATTGGCTGTCATCTCTC 43 157 486 Antisense
CAAAATATGCAATTATCCCGCGCTC 101 191 510 Antisense
TCCCGCGCTCTATATCGAAATCTCA 400 597 525 Antisense
GGAATCGTCGTATTTGGGAGGTCGG 409 527 562 Antisense
CGGATACCGAGGACCGATTCTTCCT 527 241 584 Antisense
CAACAAAAAGCCACCGGACGTCCAG 575 169 609 Antisense
TATCCAGTTTCCGCAAATCGCGTCA 332 655 636 Antisense
ACTCGCCCGTATTCGACAGCGAACT 628 99 710 Antisense
GAACAGCGAATGCCCGGAAAACCAA 278 347 808 Antisense
ACGGAAGGTTCCAAGTCGACTATCA 113 91 838 Antisense
TGGAAATCTTCTTCATACCCACACA 657 547 879 Antisense
Sequence Source Affymetrix Proprietary Database