[Home] | [Total List]

[187637_at]

Description C32D5.10 /REP_DB=WormBase Gene ID /WP=CE01840 /TR=SW:Q09268 /GB=AAC46798.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 57      4grp_high_8_8 > 01      6grp_highest_nonorm > 81      6grp_total > 48      4grp_total > 06      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 238
(-0.8)
P 		168.5
(-3)
P 		184.9
(-2.5)
M 		356.8
(3)
P 		188
B 226.4
(2.9)
P 		197.1
(-3)
P 		214.7
(0.5)
P 		226.9
(3)
P 		30
C 301
(3)
P 		155.7
(-3)
P 		206.8
(-0.9)
P 		272
(1.8)
P 		145
avr 255.1
(1.4) 		173.8
(-3) 		202.1
(-1.5) 		285.2
(3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 230
(-1.1)
P 		294.1
(3)
P 		199.8
(-3)
P 		241.4
(-0.4)
P 		218.8
(-1.8)
P 		268.3
(1.4)
P 		94
B 248.9
(0.6)
P 		199.9
(-1.9)
P 		185.1
(-2.7)
P 		243.7
(0.3)
P 		178.8
(-3)
P 		295.7
(3)
P 		117
C 320.8
(3)
P 		245
(-1.4)
P 		218.1
(-3)
P 		245.6
(-1.4)
P 		237.2
(-1.9)
P 		280.6
(0.7)
P 		103
avr 266.6
(1.9) 		246.3
(0.4) 		201
(-3) 		243.6
(0.2) 		211.6
(-2.2) 		281.5
(3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 86.7
(3)
P 		36.6
(-3)
P 		48.3
(-1.6)
M 		52.2
(-1.1)
P 		50
B 72.2
(3)
P 		48.7
(-2.9)
P 		49.7
(-2.6)
P 		48.3
(-3)
P 		24
C 99.6
(3)
P 		44.8
(-3)
P 		72.1
(-0)
P 		45.9
(-2.9)
P 		55
avr 86.2
(3) 		43.4
(-3) 		56.7
(-1.1) 		48.8
(-2.2) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 42.4
(-3)
P 		104.6
(3)
P 		43.5
(-2.9)
P 		61.2
(-1.2)
P 		66
(-0.7)
P 		65.3
(-0.8)
P 		62
B 86.6
(0.8)
P 		66.5
(-1)
P 		45
(-3)
P 		64.5
(-1.2)
P 		72.7
(-0.5)
P 		110.3
(3)
P 		65
C 118.9
(3)
P 		74.8
(-0.8)
P 		55.5
(-2.5)
P 		49.4
(-3)
P 		76.8
(-0.6)
P 		93.9
(0.8)
P 		70
avr 82.6
(2) 		82
(1.9) 		48
(-3) 		58.4
(-1.5) 		71.8
(0.4) 		89.8
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5639
Sequence Type Exemplar sequence
Representative Public ID C32D5.10 NCBI
Target Description C32D5.10 /REP_DB=WormBase Gene ID /WP=CE01840 /TR=SW:Q09268 /GB=AAC46798.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062877(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062877 NCBI Caenorhabditis elegans C32D5.10 (C32D5.10) mRNA, complete cds. 11/11 None
SNAP00000026833 ENSEMBL cdna:SNAP chromosome:CEL140:II:6349517:6351897:-1 11/11 None
GENEFINDER00000026846 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6349437:6355386:-1 11/11 None
C32D5.10 ENSEMBL cdna:known chromosome:CEL140:II:6349170:6351934:-1 gene:C32D5.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6349513-6351894(-) 97.59 100.0
Public Domain and Genome References
Gene Title
Ensembl C32D5.10
Entrez Gene 174051 Entrez gene
SwissProt Q09268 EMBL-EBI
WormBase CE29688 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46798 Hypothetical protein C32D5.10 [Caenorhabditis elegans] ref|NP_495278.2| C32D5.10 [Caenorhabditis elegans] sp|Q09268|YQDA_CAEEL Hypothetical RING finger protein C32D5.10 in chromosome II 0.0
blast T15741 hypothetical protein C32D5.10 - Caenorhabditis elegans 0.0
blast AAC46800 Hypothetical protein C32D5.11 [Caenorhabditis elegans] ref|NP_495279.1| C32D5.11 [Caenorhabditis elegans] 0.0
blast CAE59299 Hypothetical protein CBG02634 [Caenorhabditis briggsae] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.0E-9
Pfam IPR001841 EMBL-EBI Zn-finger, RING 4.1E-7
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.0E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000026846 1 1146-1163
Sequence
Target Sequence 
>C. ELEGANS:187637_AT
aatgctacgaatccgttcaggccagctccgctcccggtgccgtcacaattaccaatcgct
ggtattccatgggcagaattaacgacatcttcagcaggtgctggttctgctcgaagtcgt
ggatccgacagtgtagtagaaattgacgatgatgatgataatgatggtgtcgatgtggat
gatgatgacagagaagacagtgatgagccaagaacgtattcaaatagtgaggaagatagc
gatgaagagattcaagttgttgaacgtgatgatactattattcttgatgattcgaatcga
tcacttcctaaacctgtagcaaatggtagtgccgacaggaagagaaagtacgaatttcca
ttagaagatcattggaaaaaggccaaaaccagccagttacctgaggggcttgttgacgat
gttcaggaattgatcgcgaagtacaatatgccgttaacacaatcaatgaatatgcttgtc
ggcgcagcacaagaagccattatcaggattaacaaaccaatgccaagcacttcaagtgct
ccagacatttcgaagttcaaacctgatgatatgttacagctagcaagttatctctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCTACGAATCCGTTCAGGCCAG 405 165 1252 Antisense
GGTGCCGTCACAATTACCAATCGCT 78 501 1287 Antisense
ACCAATCGCTGGTATTCCATGGGCA 343 85 1302 Antisense
TTAACGACATCTTCAGCAGGTGCTG 236 657 1330 Antisense
GGTTCTGCTCGAAGTCGTGGATCCG 553 507 1354 Antisense
ATCGATCACTTCCTAAACCTGTAGC 617 35 1547 Antisense
AACCAGCCAGTTACCTGAGGGGCTT 152 147 1638 Antisense
GAGGGGCTTGTTGACGATGTTCAGG 106 403 1654 Antisense
GAATATGCTTGTCGGCGCAGCACAA 60 327 1719 Antisense
CACTTCAAGTGCTCCAGACATTTCG 500 197 1779 Antisense
GTTACAGCTAGCAAGTTATCTCTCT 207 447 1824 Antisense
Sequence Source Affymetrix Proprietary Database