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[187636_at]

Description Y37D8A.17 /REP_DB=WormBase Gene ID /WP=CE20221 /TR=SW:Q9XWV0 /GB=CAA21541.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 12      6grp_total > 20      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 80.8
(-2.8)
P 		101.6
(-1.9)
P 		75.7
(-3)
P 		222.3
(3)
P 		147
B 123.9
(3)
P 		93.8
(0.7)
P 		46.1
(-3)
A 		73.2
(-0.9)
P 		78
C 61.8
(-2.9)
A 		109.8
(-1)
A 		58.8
(-3)
A 		208.7
(3)
P 		150
avr 88.8
(-1.4) 		101.7
(-0.7) 		60.2
(-3) 		168.1
(3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 88.8
(2.1)
A 		77.4
(1.2)
A 		100
(3)
P 		67.8
(0.5)
A 		93
(2.4)
A 		24.2
(-3)
A 		76
B 41.5
(-3)
A 		96
(3)
P 		57.3
(-1.3)
P 		77.2
(0.9)
A 		59.6
(-1)
P 		61.8
(-0.8)
A 		55
C 43.7
(-3)
M 		89
(2.9)
P 		89.4
(2.9)
A 		90.1
(3)
A 		50.6
(-2.1)
M 		63.3
(-0.5)
P 		46
avr 58
(-1.7) 		87.5
(3) 		82.2
(2.2) 		78.4
(1.6) 		67.7
(-0.2) 		49.8
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 29.4
(1.5)
P 		22.1
(-1.9)
P 		19.8
(-3)
P 		32.5
(3)
P 		13
B 39.5
(3)
P 		23.2
(-0.4)
P 		10.7
(-3)
A 		15.6
(-2)
P 		29
C 20.5
(-3)
A 		31.6
(1.5)
A 		20.5
(-3)
A 		35.2
(3)
P 		15
avr 29.8
(3) 		25.6
(1) 		17
(-3) 		27.8
(2.1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 16.4
(-0.2)
A 		27.5
(2.8)
A 		21.8
(1.3)
P 		17.2
(0.1)
A 		28.1
(3)
A 		5.9
(-3)
A 		22
B 14.4
(-2.8)
A 		32
(3)
P 		13.9
(-3)
P 		20.4
(-0.8)
A 		24.2
(0.4)
P 		23.1
(0)
A 		18
C 16.2
(-3)
M 		27.2
(3)
P 		22.7
(0.5)
A 		18.1
(-2)
A 		16.4
(-2.9)
M 		21.2
(-0.3)
P 		11
avr 15.7
(-3) 		28.9
(3) 		19.5
(-1.3) 		18.6
(-1.7) 		22.9
(0.3) 		16.7
(-2.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187636_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7318
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.17 NCBI
Target Description Y37D8A.17 /REP_DB=WormBase Gene ID /WP=CE20221 /TR=SW:Q9XWV0 /GB=CAA21541.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067283(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067283 NCBI Caenorhabditis elegans Y37D8A.17 (Y37D8A.17) mRNA, complete cds. 11/11 None
SNAP00000028784 ENSEMBL cdna:SNAP chromosome:CEL140:III:12915170:12925498:-1 11/11 None
GENEFINDER00000028794 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12920819:12925498:-1 11/11 None
Y37D8A.17 ENSEMBL cdna:known chromosome:CEL140:III:12921402:12925498:-1 gene:Y37D8A.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12921397-12925494(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37D8A.17
Entrez Gene 189617 Entrez gene
SwissProt Q9XWV0 EMBL-EBI
WormBase CE20221 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.838.2.A1_AT similar to Transmembrane protein 33 (DB83 protein) cfa
CANINE_2:CFAAFFX.3593.1.S1_AT similar to Transmembrane protein 33 (DB83 protein) cfa
DROSOPHILA_2:1624305_AT Kruppel homolog 2 dm
DROSGENOME1:144212_AT Kruppel homolog 2 dm
HG-U133B:222642_S_AT transmembrane protein 33 hs
HG-U133_PLUS_2:222642_S_AT transmembrane protein 33 hs
HU35KSUBA:RC_AA243617_AT transmembrane protein 33 hs
HG-U133A:218465_AT transmembrane protein 33 hs
HG-U133_PLUS_2:218465_AT transmembrane protein 33 hs
HG-U133A_2:218465_AT transmembrane protein 33 hs
U133_X3P:G8922490_3P_AT transmembrane protein 33 hs
U133_X3P:G12654254_3P_A_AT transmembrane protein 33 hs
HG-U95C:61676_AT transmembrane protein 33 hs
HG-U95D:74983_AT transmembrane protein 33 hs
HG-U95E:81362_AT transmembrane protein 33 hs
MOE430A:1425568_A_AT transmembrane protein 33 mm
MOUSE430A_2:1425568_A_AT transmembrane protein 33 mm
MOUSE430_2:1425568_A_AT transmembrane protein 33 mm
MOE430A:1452053_A_AT transmembrane protein 33 mm
MOUSE430A_2:1452053_A_AT transmembrane protein 33 mm
MOUSE430_2:1452053_A_AT transmembrane protein 33 mm
MG-U74BV2:106820_AT transmembrane protein 33 mm
MG-U74BV2:114684_AT transmembrane protein 33 mm
MG-U74BV2:105581_AT transmembrane protein 33 mm
MG-U74BV2:112867_AT transmembrane protein 33 mm
MG-U74CV2:141137_AT transmembrane protein 33 mm
MG-U74BV2:163185_AT transmembrane protein 33 mm
MG-U74CV2:167554_AT transmembrane protein 33 mm
MOE430A:1428888_AT transmembrane protein 33 mm
MOUSE430A_2:1428888_AT transmembrane protein 33 mm
MOUSE430_2:1428888_AT transmembrane protein 33 mm
MOE430A:1431105_A_AT transmembrane protein 33 mm
MOUSE430A_2:1431105_A_AT transmembrane protein 33 mm
MOUSE430_2:1431105_A_AT transmembrane protein 33 mm
MOE430B:1436028_AT transmembrane protein 33 mm
MOUSE430_2:1436028_AT transmembrane protein 33 mm
MU19KSUBC:TC38382_AT transmembrane protein 33 mm
MU19KSUBC:TC40322_AT Transmembrane protein 33, mRNA (cDNA clone MGC:36605 IMAGE:5342147) mm
MU19KSUBC:TC40623_AT Transmembrane protein 33, mRNA (cDNA clone MGC:36605 IMAGE:5342147) mm
MU19KSUBC:TC40729_AT Transmembrane protein 33, mRNA (cDNA clone MGC:36605 IMAGE:5342147) mm
RAE230A:1369076_AT transmembrane protein 33 rn
RAT230_2:1369076_AT transmembrane protein 33 rn
RG-U34B:RC_AI013448_AT Transmembrane protein 33 rn
RG-U34C:RC_AI233887_AT Transmembrane protein 33 rn
RAE230A:1389910_AT Transmembrane protein 33 rn
RAT230_2:1389910_AT Transmembrane protein 33 rn
RAT230_2:1375514_AT Transmembrane protein 33 rn
RAE230A:1375514_AT Transmembrane protein 33 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21541 Hypothetical protein Y37D8A.17 [Caenorhabditis elegans] ref|NP_499684.1| Y37D8A.17 [Caenorhabditis elegans] sp|Q9XWV0|TMM33_CAEEL Hypothetical UPF0121 protein Y37D8A.17 in chromosome I 1.0E-131
blast CAA21541 Hypothetical protein Y37D8A.17 [Caenorhabditis elegans] ref|NP_499684.1| Y37D8A.17 [Caenorhabditis elegans] sp|Q9XWV0|TMM33_CAEEL Hypothetical UPF0121 protein Y37D8A.17 in chromosome I 1.0E-126
blast CAA21541 Hypothetical protein Y37D8A.17 [Caenorhabditis elegans] ref|NP_499684.1| Y37D8A.17 [Caenorhabditis elegans] sp|Q9XWV0|TMM33_CAEEL Hypothetical UPF0121 protein Y37D8A.17 in chromosome I 1.0E-125
blast CAE69548 Hypothetical protein CBG15760 [Caenorhabditis briggsae] 1.0E-120
blast CAE69548 Hypothetical protein CBG15760 [Caenorhabditis briggsae] 1.0E-115
blast XP_420732 PREDICTED: similar to DB83 protein [Gallus gallus] 3.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR005344 EMBL-EBI Protein of unknown function UPF0121 1.6E-90
Pfam IPR005344 EMBL-EBI Protein of unknown function UPF0121 5.9E-85
Pfam IPR005344 EMBL-EBI Protein of unknown function UPF0121 5.5E-87
Pfam IPR005344 EMBL-EBI Protein of unknown function UPF0121 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499684.1 3 51-73,125-147,180-202
Y37D8A.17 3 51-73,125-147,180-202
SNAP00000028784 7 51-73,125-147,199-221,286-308,315-337,352-374,386-408
GENEFINDER00000028794 3 51-73,125-147,214-236
Sequence
Target Sequence 
>C. ELEGANS:187636_AT
tgccggctcattctgcgtattataagatcttcgcagcttccgccgccacattcgccctcc
gtcttcacacgagaattcaaggacaatttgcactgaatgcgcagtttattcagcgtctca
tcatcgaagattcattccattatctcgtctattctgtcgtattcctgatggctgctccag
taagcatggctgctcttccagttactatctatgcggctcttcatgcttgcacttttatga
cgaaaatcctacgtgaaaccggtcacaccagctcaatcatcccaaaactggaacaattca
ctgctcatcaaacccaaaatgctctcggaatcatcgcttgctcggaaatctttctcgttc
cactgctcgtctcgctgattttcagtggaaaaggatcactgctcctgccgttcgcctact
accggttcctttcgctgagatacgcctccagacggaatccgtcgactcgtcaagcgttcg
cgcaaatgcgtggatcacttcagaatgttgcgatgagctcgagttgcccccgtccgatta
gctcactgatctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGGCTCATTCTGCGTATTATAA 691 583 230 Antisense
GTTTATTCAGCGTCTCATCATCGAA 603 449 333 Antisense
GATTCATTCCATTATCTCGTCTATT 521 431 358 Antisense
TCGTCTATTCTGTCGTATTCCTGAT 366 605 374 Antisense
ATTCCTGATGGCTGCTCCAGTAAGC 183 9 390 Antisense
TCCAGTTACTATCTATGCGGCTCTT 179 591 426 Antisense
GAACAATTCACTGCTCATCAAACCC 227 353 520 Antisense
AAATGCTCTCGGAATCATCGCTTGC 225 119 546 Antisense
GCTCGGAAATCTTTCTCGTTCCACT 281 299 569 Antisense
TGAGATACGCCTCCAGACGGAATCC 582 567 665 Antisense
CGTCCGATTAGCTCACTGATCTACA 670 245 760 Antisense
Sequence Source Affymetrix Proprietary Database