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[187635_at]

Description C05E11.1 /REP_DB=WormBase Gene ID /WP=CE03931 /TR=SW:Q17667 /GB=AAA96195.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 65      6grp_total > 84      4grp_total > 02      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4948
1 2 3 4 range
A 641.8
(-3)
P 		799.8
(-2.8)
P 		789.9
(-2.8)
P 		5530.5
(3)
P 		4889
B 645.2
(-3)
P 		681.3
(-2.9)
P 		691.5
(-2.9)
P 		4745.3
(3)
P 		4100
C 646.5
(-2.9)
P 		582.9
(-3)
P 		684.8
(-2.8)
P 		4378.5
(3)
P 		3796
avr 644.5
(-3) 		688
(-2.9) 		722.1
(-2.9) 		4884.8
(3) 		4240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 843
1 2 3 4 5 6 range
A 927
(-0.9)
P 		766.6
(-3)
P 		844.2
(-2)
P 		1216.9
(3)
P 		1208.8
(2.9)
P 		1122.9
(1.7)
P 		450
B 793.6
(-3)
P 		857.6
(-2.5)
P 		994.1
(-1.3)
P 		1521.4
(3)
P 		1119.3
(-0.3)
P 		1128.5
(-0.2)
P 		728
C 688
(-3)
P 		909.6
(-1.4)
P 		979.9
(-0.9)
P 		1530.5
(3)
P 		1050.3
(-0.4)
P 		1047
(-0.4)
P 		843
avr 802.9
(-3) 		844.6
(-2.6) 		939.4
(-1.7) 		1422.9
(3) 		1126.1
(0.1) 		1099.5
(-0.1) 		620
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 851
1 2 3 4 range
A 233.7
(-2.4)
P 		173.6
(-3)
P 		206.5
(-2.7)
P 		809.6
(3)
P 		636
B 205.8
(-2.7)
P 		168.3
(-2.9)
P 		160.2
(-3)
P 		1011.2
(3)
P 		851
C 214
(-2.5)
P 		167.6
(-3)
P 		238.7
(-2.3)
P 		738.3
(3)
P 		571
avr 217.8
(-2.6) 		169.8
(-3) 		201.8
(-2.7) 		853
(3) 		683

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 170.9
(-3)
P 		272.6
(0.1)
P 		183.9
(-2.6)
P 		308.6
(1.3)
P 		364.7
(3)
P 		273.4
(0.2)
P 		194
B 276.1
(-2)
P 		285.5
(-1.8)
P 		241.4
(-3)
P 		403
(1.5)
P 		454.8
(3)
P 		420.8
(2)
P 		213
C 255
(-2.7)
P 		277.6
(-1.3)
P 		249.4
(-3)
P 		307.8
(0.5)
P 		339.9
(2.4)
P 		350.5
(3)
P 		101
avr 234
(-2.7) 		278.6
(-1) 		224.9
(-3) 		339.8
(1.3) 		386.5
(3) 		348.2
(1.6) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187635_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16371
Sequence Type Exemplar sequence
Representative Public ID C05E11.1 NCBI
Target Description C05E11.1 /REP_DB=WormBase Gene ID /WP=CE03931 /TR=SW:Q17667 /GB=AAA96195.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076387 NCBI Caenorhabditis elegans C05E11.1 (C05E11.1) mRNA, complete cds. 11/11 None
SNAP00000025331 ENSEMBL cdna:SNAP chromosome:CEL140:X:4588738:4590160:1 11/11 None
GENEFINDER00000025334 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4588738:4590160:1 11/11 None
C05E11.1 ENSEMBL cdna:known chromosome:CEL140:X:4588738:4590417:1 gene:C05E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4588919-4590161(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05E11.1
Entrez Gene 180731 Entrez gene
SwissProt Q17667 EMBL-EBI
WormBase CE29561 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.17769.1.S1_S_AT similar to Lunapark cfa
CANINE_2:CFAAFFX.20717.1.S1_AT similar to Lunapark cfa
DROSOPHILA_2:1622944_AT dm
DROSGENOME1:152948_AT dm
CHICKEN:GGA.12019.1.S1_AT Lunapark gga
HU35KSUBB:RC_AA101146_AT KIAA1715 hs
U133_X3P:HS.209561.0.S2_3P_X_AT KIAA1715 hs
U133_X3P:HS.209561.0.S1_3P_AT KIAA1715 hs
U133_X3P:225718_3P_AT KIAA1715 hs
HG-U133_PLUS_2:225717_AT KIAA1715 hs
HG-U133B:225717_AT KIAA1715 hs
HG-U133_PLUS_2:225718_AT KIAA1715 hs
HG-U133B:225718_AT KIAA1715 hs
HG-U95C:64734_AT KIAA1715 hs
HG-U95E:76383_AT KIAA1715 hs
HG-U95E:82447_AT KIAA1715 hs
HG-U95E:86977_AT KIAA1715 hs
HG-U133_PLUS_2:229173_AT KIAA1715 hs
HG-U133B:229173_AT KIAA1715 hs
HG-U95C:51530_AT KIAA1715 hs
HG-U95E:88628_AT KIAA1715 hs
HG-U95E:89190_R_AT KIAA1715 hs
MG-U74BV2:116440_AT limb and neural patterns mm
MG-U74BV2:116439_AT limb and neural patterns mm
MG-U74BV2:163864_I_AT limb and neural patterns mm
MG-U74CV2:165727_AT limb and neural patterns mm
MOE430B:1453035_AT limb and neural patterns mm
MOUSE430_2:1453035_AT limb and neural patterns mm
MOE430B:1429120_AT limb and neural patterns mm
MOUSE430_2:1429120_AT limb and neural patterns mm
RG-U34B:RC_AI013726_AT limb and neural patterns (predicted) rn
RAE230B:1382519_AT limb and neural patterns (predicted) rn
RAT230_2:1382519_AT limb and neural patterns (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96195 Hypothetical protein C05E11.1 [Caenorhabditis elegans] ref|NP_508788.1| C05E11.1 [Caenorhabditis elegans] sp|Q17667|YANI_CAEEL Hypothetical protein C05E11.1 in chromosome X 0.0
blast T15418 hypothetical protein C05E11.1 - Caenorhabditis elegans 1.0E-174
blast T15418 hypothetical protein C05E11.1 - Caenorhabditis elegans 1.0E-173
blast CAE68618 Hypothetical protein CBG14500 [Caenorhabditis briggsae] 1.0E-124
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508788.1 2 40-62,72-94
C05E11.1 2 40-62,72-94
SNAP00000025331 2 21-43,53-72
GENEFINDER00000025334 2 40-62,72-94
Sequence
Target Sequence 
>C. ELEGANS:187635_AT
aaatcgccatcgcctatcaagaagcttactgctgactcgtcaatgtttgcaactccgaag
caagagcaaaaaagagttgaaactccaacggcgcaaggtccgaactctgccatgaactcg
atgaacatgaccccttatcaccagcggaacagaaatgctgtcccaattcgtccattcctt
cgccagacaactgcctttgacagagtgcttgactattttatgtccgatggacctaactgc
agaaacgctttgatttgctccatttgtcatacacataatggaatgtcaactccggccgag
tatccatatatatccttccggtgcttcgaatgcggacatcttaatccggccaagaaaatg
ggaccacaaattccgttgactcgtccgccgatgggtccaaagggcattcaacacaatgga
agagttggtccgtctgaaaatactcacaatatgatggagaatcagaagccgtcaactgac
ctaaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCGCCATCGCCTATCAAGAAGC 683 117 331 Antisense
GAAGCTTACTGCTGACTCGTCAATG 374 341 351 Antisense
TCCAACGGCGCAAGGTCCGAACTCT 671 585 414 Antisense
TCCGAACTCTGCCATGAACTCGATG 560 593 429 Antisense
ACCCCTTATCACCAGCGGAACAGAA 142 89 460 Antisense
TTCGCCAGACAACTGCCTTTGACAG 161 697 509 Antisense
GATTTGCTCCATTTGTCATACACAT 2 429 582 Antisense
ATCCATATATATCCTTCCGGTGCTT 692 39 632 Antisense
GGACCACAAATTCCGTTGACTCGTC 118 523 691 Antisense
GTCCGCCGATGGGTCCAAAGGGCAT 74 475 713 Antisense
CAGAAGCCGTCAACTGACCTAACCC 2 203 793 Antisense
Sequence Source Affymetrix Proprietary Database