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[187634_at]

Description B0303.11 /REP_DB=WormBase Gene ID /WP=CE24763 /TR=SW:P34261 /GB=AAA27902.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 81      6grp_total > 10      4grp_total > 63      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 458.2
(3)
P 		326.3
(-0.7)
P 		331
(-0.6)
P 		243.8
(-3)
P 		214
B 374.4
(3)
P 		314.2
(-3)
P 		330.9
(-1.3)
P 		368
(2.4)
P 		60
C 404.7
(3)
P 		292.5
(-1.1)
P 		352.4
(1.1)
P 		238.5
(-3)
P 		166
avr 412.4
(3) 		311
(-1.7) 		338.1
(-0.5) 		283.4
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 160.6
(-3)
P 		383.7
(3)
P 		230.9
(-1.1)
P 		307.4
(0.9)
P 		300
(0.7)
P 		268.4
(-0.1)
P 		223
B 345.9
(2.9)
P 		347.8
(3)
P 		254.7
(-3)
P 		326.8
(1.6)
P 		305.8
(0.3)
P 		275.6
(-1.7)
P 		93
C 268
(-0.3)
P 		356.7
(3)
P 		344.1
(2.5)
P 		323.7
(1.8)
P 		287.2
(0.5)
P 		193.1
(-3)
P 		164
avr 258.2
(-2.4) 		362.7
(3) 		276.6
(-1.4) 		319.3
(0.8) 		297.7
(-0.3) 		245.7
(-3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 166.8
(3)
P 		70.8
(-1.4)
P 		86.5
(-0.7)
P 		35.7
(-3)
P 		131
B 119.4
(3)
P 		77.6
(-2.9)
P 		76.7
(-3)
P 		78.4
(-2.8)
P 		43
C 134
(3)
P 		84.1
(-0.2)
P 		122.8
(2.3)
P 		40.2
(-3)
P 		94
avr 140.1
(3) 		77.5
(-1.2) 		95.3
(-0) 		51.4
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 29.6
(-3)
P 		136.5
(3)
P 		50.3
(-1.8)
P 		78
(-0.3)
P 		90.5
(0.4)
P 		65.4
(-1)
P 		107
B 120.3
(2.6)
P 		115.8
(2.2)
P 		61.9
(-3)
P 		86.6
(-0.6)
P 		124.2
(3)
P 		102.8
(0.9)
P 		62
C 99.3
(1.7)
P 		108.8
(3)
P 		87.6
(0.1)
P 		65.1
(-2.9)
P 		92.9
(0.8)
P 		64.7
(-3)
P 		44
avr 83.1
(-1.2) 		120.4
(3) 		66.6
(-3) 		76.6
(-1.9) 		102.5
(1) 		77.6
(-1.8) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187634_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6358
Sequence Type Exemplar sequence
Representative Public ID B0303.11 NCBI
Target Description B0303.11 /REP_DB=WormBase Gene ID /WP=CE24763 /TR=SW:P34261 /GB=AAA27902.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066520(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066520 NCBI Caenorhabditis elegans B0303.11 (B0303.11) mRNA, complete cds. 9/11 A 
SNAP00000042408 ENSEMBL cdna:SNAP chromosome:CEL140:III:8700827:8709469:-1 9/11 None
GENEFINDER00000042422 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8703347:8709954:-1 9/11 None
B0303.11 ENSEMBL cdna:known chromosome:CEL140:III:8703204:8710016:-1 gene:B0303.11 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8703341-8709310(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0303.11
Entrez Gene 176222 Entrez gene
SwissProt P34261 EMBL-EBI
WormBase CE36777 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27902 Hypothetical protein B0303.11 [Caenorhabditis elegans] ref|NP_498921.2| B0303.11 [Caenorhabditis elegans] sp|P34261|YKAA_CAEEL Putative amino-acid permease B0303.11 0.0
blast CAE69286 Hypothetical protein CBG15341 [Caenorhabditis briggsae] 0.0
blast S27793 hypothetical protein 4 (cosmid B0303) - Caenorhabditis elegans 1.0E-103
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498921.2 10 53-75,96-118,142-159,166-188,213-235,244-266,286-308,365-387,397-416,421-440
B0303.11 10 53-75,96-118,142-159,166-188,213-235,244-266,286-308,365-387,397-416,421-440
SNAP00000042408 10 22-44,65-87,111-128,135-157,182-204,213-235,255-277,334-356,366-385,390-409
GENEFINDER00000042422 10 72-94,120-142,166-183,190-212,237-259,268-290,310-332,389-411,421-440,445-464
Sequence
Target Sequence 
>C. ELEGANS:187634_AT
gtggattgacaatgcttgcaccatatttattgactcaagctggaagtttcttggaaggag
cacatattcgagtattcacaaaaactgatggaaaagataataagaggtttttctctaaac
ttttgcgttataaacgaagagtaaatatgaaaccattgaaacaacaaattcgaaacacta
ataaacgaggaacaaaagaacatggctgcaattcttcgaaagttccatatcgactcttca
gatcttcatattcttccagaattttcgaaacctccgtgcaaacagacgttagtttcaaga
tcttcctagattttaaagtgttaaaaatgtctatagatacgatgaattccgagcaaaaat
tgacaaatacaaggtggaaaccagcagcagtgaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGATTGACAATGCTTGCACCATA 642 489 1994 Antisense
TGCTTGCACCATATTTATTGACTCA 513 579 2006 Antisense
TATTGACTCAAGCTGGAAGTTTCTT 28 665 2021 Antisense
GGAGCACATATTCGAGTATTCACAA 162 521 2050 Antisense
AACATGGCTGCAATTCTTCGAAAGT 317 137 2192 Antisense
GAAAGTTCCATATCGACTCTTCAGA 272 361 2211 Antisense
GACTCTTCAGATCTTCATATTCTTC 142 375 2225 Antisense
TCCAGAATTTTCGAAACCTCCGTGC 45 589 2248 Antisense
GAAACCTCCGTGCAAACAGACGTTA 541 355 2260 Antisense
GACGTTAGTTTCAAGATCTTCCTAG 674 377 2278 Antisense
GGTGGAAACCAGCAGCAGTGAATCA 502 499 2366 Antisense
Sequence Source Affymetrix Proprietary Database