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[187633_s_at]

Description K04G7.11 /REP_DB=WormBase Gene ID /WP=CE25040 /TR=SW:Q09385 /GB=AAA62537.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 86      6grp_total > 66      4grp_total > 04      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 772
1 2 3 4 range
A 740.7
(-1.5)
P 		674.3
(-2.5)
P 		642.4
(-3)
P 		1046.4
(3)
P 		404
B 833.8
(-3)
P 		891.3
(-2.4)
P 		841.5
(-2.9)
P 		1414.7
(3)
P 		581
C 1027.8
(1)
P 		703.1
(-3)
P 		746.8
(-2.5)
P 		1184.7
(3)
P 		482
avr 867.4
(-1.4) 		756.2
(-2.8) 		743.6
(-3) 		1215.3
(3) 		472

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 484
1 2 3 4 5 6 range
A 790.9
(-3)
P 		908.7
(0.2)
P 		1010.2
(3)
P 		935
(0.9)
P 		817.2
(-2.3)
P 		943.2
(1.2)
P 		219
B 876.8
(-1.4)
P 		852.1
(-2)
P 		1044
(2.3)
P 		807.3
(-3)
P 		916.8
(-0.5)
P 		1073.9
(3)
P 		267
C 1083.7
(1.2)
P 		747.5
(-3)
P 		799.4
(-2.4)
P 		933
(-0.7)
P 		873
(-1.4)
P 		1231.7
(3)
P 		484
avr 917.1
(-1) 		836.1
(-3) 		951.2
(-0.2) 		891.8
(-1.6) 		869
(-2.2) 		1082.9
(3) 		247
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 269.7
(3)
P 		146.4
(-3)
P 		167.9
(-2)
P 		153.2
(-2.7)
P 		123
B 265.9
(1)
P 		220.1
(-1.6)
P 		195
(-3)
P 		301.5
(3)
P 		107
C 340.2
(3)
P 		202.1
(-2.9)
P 		260.3
(-0.4)
P 		199.8
(-3)
P 		140
avr 291.9
(3) 		189.5
(-3) 		207.7
(-1.9) 		218.2
(-1.3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 145.8
(-3)
P 		323.2
(3)
P 		220
(-0.5)
P 		237.1
(0.1)
P 		246.6
(0.4)
P 		229.6
(-0.2)
P 		177
B 305.1
(-0.1)
P 		283.6
(-0.8)
P 		253.5
(-1.7)
P 		213.8
(-3)
P 		372.5
(2.1)
P 		400.4
(3)
P 		187
C 401.7
(2.7)
P 		228.1
(-1.9)
P 		203.5
(-2.6)
P 		187.6
(-3)
P 		282.5
(-0.5)
P 		412.3
(3)
P 		225
avr 284.2
(0.2) 		278.3
(-0.1) 		225.7
(-2.4) 		212.8
(-3) 		300.5
(0.9) 		347.4
(3) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187633_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6157
Sequence Type Exemplar sequence
Representative Public ID K04G7.11 NCBI
Target Description K04G7.11 /REP_DB=WormBase Gene ID /WP=CE25040 /TR=SW:Q09385 /GB=AAA62537.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066165 NCBI Caenorhabditis elegans K04G7.11 (K04G7.11) mRNA, complete cds. 11/11 None
SNAP00000036056 ENSEMBL cdna:SNAP chromosome:CEL140:III:7161240:7162039:-1 11/11 None
GENEFINDER00000036060 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7161240:7162039:-1 11/11 None
K04G7.11 ENSEMBL cdna:known chromosome:CEL140:III:7161080:7162039:-1 gene:K04G7.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7161237-7161983(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04G7.11
Entrez Gene 176003 Entrez gene
SwissProt Q09385 EMBL-EBI
WormBase CE30678 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:266537_AT GCIP-interacting family protein at
CANINE:1588383_AT similar to CCNDBP1 interactor isoform 1 cfa
CANINE_2:CFA.2622.1.S1_AT similar to CCNDBP1 interactor isoform 1 cfa
CANINE_2:CFAAFFX.19980.1.S1_S_AT similar to CCNDBP1 interactor isoform 1 cfa
DROSOPHILA_2:1634281_AT dm
DROSGENOME1:146968_AT dm
HG-U133A_2:202553_S_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
HG-U133A:202553_S_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
HG-U133_PLUS_2:202553_S_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
HU35KSUBA:RC_AA136670_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
HU35KSUBA:HUM_ALU_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
HU35KSUBB:HUM_ALU_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
HU35KSUBC:HUM_ALU_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
HU35KSUBD:HUM_ALU_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
HUGENEFL:HUM_ALU_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
HC-G110:HUM_ALU_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
U133_X3P:G7661635_3P_A_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
U133_X3P:HS2.290519.1.S1_3P_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
HG-U133_PLUS_2:1559979_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
HG-U95AV2:32792_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
HG-U95B:53454_R_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
HU35KSUBD:RC_AA495817_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) hs
MG-U74AV2:96341_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) mm
MOE430A:1424104_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) mm
MOUSE430A_2:1424104_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) mm
MOUSE430_2:1424104_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) mm
MU19KSUBC:TC40350_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) (Syf2), mRNA mm
MU19KSUBC:TC40350_G_AT SYF2 homolog, RNA splicing factor (S. cerevisiae) (Syf2), mRNA mm
RG-U34B:RC_AA851600_AT GCIP-interacting protein p29 rn
RG-U34C:RC_AI228120_AT GCIP-interacting protein p29 rn
RAE230A:1398244_AT GCIP-interacting protein p29 rn
RAT230_2:1398244_AT GCIP-interacting protein p29 rn
RAE230B:1396107_AT GCIP-interacting protein p29 rn
RAT230_2:1396107_AT GCIP-interacting protein p29 rn
Protein Similarities
Method ID Description E-Value
blast AAA62538 Hypothetical protein K04G7.11 [Caenorhabditis elegans] ref|NP_498566.2| K04G7.11 [Caenorhabditis elegans] sp|Q09385|YMWB_CAEEL Hypothetical protein K04G7.11 in chromosome III 1.0E-110
blast CAE70146 Hypothetical protein CBG16608 [Caenorhabditis briggsae] 1.0E-104
blast CAE70146 Hypothetical protein CBG16608 [Caenorhabditis briggsae] 1.0E-103
blast AAT68230 GekBS028P [Gekko japonicus] 8.0E-50
Sequence
Target Sequence 
>C. ELEGANS:187633_S_AT
aatcagaggttccgtgatcttcacaaactccgccaaagagcgagaaaagagaatcacgaa
caggtcgttgaagaagatcgtcgcagcaaacttccaaaaaaccacgaagcaaaaaaggaa
agagatcaatggcaggttaaagagctacaagatcgaaaagctgcagaagacaagggattg
gactatgaacgtgttcgcagtttagagatgtctgcagatgttactgagaagcttggattt
acttcttacgaagatatgactcttcgtcaacatactcgcctgactgctgctcttgatcca
gatcttgattcttacaaaaagatgagagaatgcgttggaggggaacagttttacccaact
gctgacacacttattcatggaaatcactatccgacaactgctgcaatggataagctcact
aaagatgttcacggccaagttaaaagacgagaacaatatcatcgtcgtagactttatgat
cctgacgcgccaattgattaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCAGAGGTTCCGTGATCTTCACA 100 171 25 Antisense
ATCTTCACAAACTCCGCCAAAGAGC 264 31 41 Antisense
AGATCGTCGCAGCAAACTTCCAAAA 226 59 99 Antisense
GGGATTGGACTATGAACGTGTTCGC 371 495 198 Antisense
ATGACTCTTCGTCAACATACTCGCC 412 45 280 Antisense
CTGCTGCTCTTGATCCAGATCTTGA 479 237 308 Antisense
TACCCAACTGCTGACACACTTATTC 646 649 376 Antisense
TGGAAATCACTATCCGACAACTGCT 398 547 402 Antisense
AGCTCACTAAAGATGTTCACGGCCA 73 79 437 Antisense
ATCGTCGTAGACTTTATGATCCTGA 550 35 485 Antisense
GATCCTGACGCGCCAATTGATTACA 263 417 502 Antisense
Sequence Source Affymetrix Proprietary Database