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[187632_at]

Description ZK1236.3 /REP_DB=WormBase Gene ID /WP=CE00532 /TR=SW:P34619 /GB=AAA28193.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 40      6grp_total > 35      4grp_total > 51      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 673.3
(0.5)
P 		610.7
(-3)
P 		717
(3)
P 		632.6
(-1.8)
P 		106
B 679.1
(-3)
P 		796.3
(3)
P 		689.6
(-2.5)
P 		726.4
(-0.6)
P 		117
C 739.4
(2.4)
P 		751.1
(3)
P 		704.5
(0.7)
P 		631
(-3)
P 		120
avr 697.3
(0.6) 		719.4
(3) 		703.7
(1.3) 		663.3
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 749.5
(2.6)
P 		767.7
(3)
P 		634.8
(0)
P 		498.1
(-3)
P 		499
(-3)
P 		698.9
(1.5)
P 		270
B 788.9
(3)
P 		672.4
(0.8)
P 		768.5
(2.6)
P 		596.8
(-0.6)
P 		465.6
(-3)
P 		646.6
(0.4)
P 		323
C 709.6
(3)
P 		711.1
(3)
P 		657.1
(1.7)
P 		584.6
(-0)
P 		458.8
(-3)
P 		683.8
(2.4)
P 		252
avr 749.3
(3) 		717.1
(2.3) 		686.8
(1.6) 		559.8
(-1.1) 		474.5
(-3) 		676.4
(1.4) 		275
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 245.1
(3)
P 		132.6
(-1.4)
P 		187.4
(0.7)
P 		92.6
(-3)
P 		153
B 216.6
(3)
P 		196.7
(1.1)
P 		159.8
(-2.5)
P 		154.8
(-3)
P 		62
C 244.8
(3)
P 		215.9
(1.7)
P 		245.5
(3)
P 		106.4
(-3)
P 		139
avr 235.5
(3) 		181.7
(0.3) 		197.6
(1.1) 		117.9
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 138.2
(-2.5)
P 		273
(3)
P 		138.2
(-2.5)
P 		126.3
(-3)
P 		150.6
(-2)
P 		170.2
(-1.2)
P 		147
B 274.5
(3)
P 		223.8
(0.4)
P 		186.6
(-1.5)
P 		158.1
(-3)
P 		189.2
(-1.4)
P 		241.1
(1.3)
P 		116
C 263
(3)
P 		217
(1.1)
P 		167.2
(-1)
P 		117.6
(-3)
P 		148.5
(-1.7)
P 		228.9
(1.6)
P 		145
avr 225.2
(2.3) 		237.9
(3) 		164
(-1.3) 		134
(-3) 		162.8
(-1.3) 		213.4
(1.6) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187632_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7576
Sequence Type Exemplar sequence
Representative Public ID ZK1236.3 NCBI
Target Description ZK1236.3 /REP_DB=WormBase Gene ID /WP=CE00532 /TR=SW:P34619 /GB=AAA28193.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066460(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066460 NCBI Caenorhabditis elegans ZK1236.3 (ZK1236.3) mRNA, complete cds. 11/11 None
GENEFINDER00000024917 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8416142:8422459:1 11/11 None
SNAP00000024906 ENSEMBL cdna:SNAP chromosome:CEL140:III:8419123:8422339:1 11/11 None
ZK1236.3 ENSEMBL cdna:known chromosome:CEL140:III:8416142:8422565:1 gene:ZK1236.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8416137-8422335(+) 98.57 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1236.3
Entrez Gene 176189 Entrez gene
SwissProt P34619 EMBL-EBI
WormBase CE00532 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28193 Hypothetical protein ZK1236.3 [Caenorhabditis elegans] ref|NP_498861.1| ZK1236.3 [Caenorhabditis elegans] sp|P34619|YO83_CAEEL Hypothetical protein ZK1236.3 in chromosome III 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024917 1 1014-1036
Sequence
Target Sequence 
>C. ELEGANS:187632_AT
ggcacttcccgccatatgaaaaatcaggaagattgaatgtgagcaacacaataaaagcta
tcaacgagtatcgtcttctgtgcaattctcgacaggctgatccagcaagtttcctcgaat
tctacttccttggtgatccaatgccacacttcaataaaattctttcaattgctgattaca
atatgtatttgtctcgaagacgatgcgatgaggcagatgtcaagattcatcgaatgtcgc
acagtgatcaattgcaattgtaccttttggaacttcaatccgacgagtcaaatgtggaaa
aatggaagacattctatagaattatgcagtgggatttgccactaaacaatgagtttccaa
gaatacttctaccatcttcattagacatcggaagaccagttgttgatagaaagaagaaat
caattgatcaggttatgaatcatatacatcgaatgcatagtcaacgcccaccaagcatgg
gaaactcttccacatcttctgaagcttcatctaccagtccaacaaatgctgcaacagcga
ccagttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACTTCCCGCCATATGAAAAATC 419 533 2408 Antisense
AGTATCGTCTTCTGTGCAATTCTCG 333 63 2474 Antisense
GCAATTCTCGACAGGCTGATCCAGC 178 323 2489 Antisense
TGATCCAGCAAGTTTCCTCGAATTC 426 565 2505 Antisense
GAATTCTACTTCCTTGGTGATCCAA 13 325 2524 Antisense
TTGGAACTTCAATCCGACGAGTCAA 134 657 2674 Antisense
AGAATACTTCTACCATCTTCATTAG 656 75 2767 Antisense
ATCGAATGCATAGTCAACGCCCACC 235 35 2855 Antisense
GAAACTCTTCCACATCTTCTGAAGC 303 357 2888 Antisense
CTGAAGCTTCATCTACCAGTCCAAC 671 237 2906 Antisense
AATGCTGCAACAGCGACCAGTTCTC 191 167 2932 Antisense
Sequence Source Affymetrix Proprietary Database