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[187631_at]

Description Y47D3A.21 /REP_DB=WormBase Gene ID /WP=CE22051 /TR=SW:Q9NAH4 /GB=CAB55081.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 66      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_total > 66      4grp_total > 59      6grp_high1_sub > Da      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 323.9
(-1)
P 		416
(0.9)
P 		514
(3)
P 		227.8
(-3)
P 		286
B 375.6
(1.2)
P 		415.3
(2.7)
P 		422.9
(3)
P 		265
(-3)
P 		158
C 347.6
(1.2)
P 		392.7
(2.7)
P 		401.3
(3)
P 		225.8
(-3)
P 		176
avr 349
(0.2) 		408
(1.9) 		446.1
(3) 		239.5
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 169.1
(3)
P 		130.1
(-1.2)
P 		112.8
(-3)
P 		164.5
(2.5)
P 		120.4
(-2.2)
P 		153.1
(1.3)
P 		56
B 124.9
(-2.9)
P 		164.7
(-0.6)
P 		175
(-0)
A 		127.1
(-2.8)
P 		123.3
(-3)
P 		227.9
(3)
P 		105
C 130.5
(-2.7)
P 		135.6
(-2.4)
P 		192.7
(0.4)
P 		123.8
(-3)
P 		155.3
(-1.5)
P 		246.2
(3)
P 		122
avr 141.5
(-2.3) 		143.5
(-2.2) 		160.2
(-0.9) 		138.5
(-2.6) 		133
(-3) 		209.1
(3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 117.9
(2)
P 		90.3
(0.4)
P 		134.4
(3)
P 		33.3
(-3)
P 		101
B 119.8
(3)
P 		102.6
(1.4)
P 		98
(0.9)
P 		56.5
(-3)
P 		63
C 115.1
(1.5)
P 		112.9
(1.4)
P 		139.9
(3)
P 		38.1
(-3)
P 		102
avr 117.6
(2.5) 		101.9
(1.4) 		124.1
(3) 		42.6
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 31.2
(-1.2)
P 		46.3
(3)
P 		24.6
(-3)
P 		41.7
(1.7)
P 		36.3
(0.2)
P 		37.3
(0.5)
P 		22
B 43.4
(-1.9)
P 		54.8
(-0.5)
P 		42.5
(-2)
A 		33.7
(-3)
P 		50.1
(-1.1)
P 		85
(3)
P 		51
C 48.4
(-0.5)
P 		41.4
(-1.3)
P 		49
(-0.5)
P 		24.9
(-3)
P 		50.3
(-0.3)
P 		82.4
(3)
P 		58
avr 41
(-1.7) 		47.5
(-0.6) 		38.7
(-2.1) 		33.4
(-3) 		45.6
(-0.9) 		68.2
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187631_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7388
Sequence Type Exemplar sequence
Representative Public ID Y47D3A.21 NCBI
Target Description Y47D3A.21 /REP_DB=WormBase Gene ID /WP=CE22051 /TR=SW:Q9NAH4 /GB=CAB55081.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067049(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067049 NCBI Caenorhabditis elegans Y47D3A.21 (Y47D3A.21) mRNA, complete cds. 11/11 None
SNAP00000007217 ENSEMBL cdna:SNAP chromosome:CEL140:III:11271881:11278793:-1 11/11 None
GENEFINDER00000007268 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11276660:11278793:-1 11/11 None
Y47D3A.21 ENSEMBL cdna:known chromosome:CEL140:III:11276289:11278793:-1 gene:Y47D3A.21 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11276655-11278789(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D3A.21
Entrez Gene 176556 Entrez gene
SwissProt Q9NAH4 EMBL-EBI
WormBase CE22051 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250343_AT eukaryotic translation initiation factor SUI1 family protein at
CANINE:1591235_AT similar to Density-regulated protein (DRP) (DRP1 protein) (Smooth muscle cell associated protein-3) (SMAP-3) cfa
CANINE:1591419_AT similar to Density-regulated protein (DRP) (DRP1 protein) (Smooth muscle cell associated protein-3) (SMAP-3) cfa
CANINE_2:CFA.13451.1.A1_AT similar to Density-regulated protein (DRP) (DRP1 protein) (Smooth muscle cell associated protein-3) (SMAP-3) cfa
CANINE_2:CFA.9933.1.S1_AT similar to Density-regulated protein (DRP) (DRP1 protein) (Smooth muscle cell associated protein-3) (SMAP-3) cfa
CANINE_2:CFAAFFX.12551.1.S1_AT similar to Density-regulated protein (DRP) (DRP1 protein) (Smooth muscle cell associated protein-3) (SMAP-3) cfa
DROSOPHILA_2:1630745_AT dm
DROSGENOME1:152820_AT dm
MG-U74BV2:108545_AT density-regulated protein mm
MG-U74CV2:137225_AT density-regulated protein mm
MG-U74CV2:167359_F_AT density-regulated protein mm
MOE430A:1420367_AT density-regulated protein mm
MOUSE430A_2:1420367_AT density-regulated protein mm
MOUSE430_2:1420367_AT density-regulated protein mm
MOE430A:1420368_AT density-regulated protein mm
MOUSE430A_2:1420368_AT density-regulated protein mm
MOUSE430_2:1420368_AT density-regulated protein mm
MOUSE430_2:1446948_AT Density-regulated protein (Denr), mRNA mm
MOE430B:1446948_AT Density-regulated protein (Denr), mRNA mm
MOE430A:1449598_AT Density-regulated protein (Denr), mRNA mm
MOUSE430A_2:1449598_AT Density-regulated protein (Denr), mRNA mm
MOUSE430_2:1449598_AT Density-regulated protein (Denr), mRNA mm
MG-U74AV2:94684_AT Density-regulated protein (Denr), mRNA mm
MU19KSUBC:TC40327_AT Density-regulated protein (Denr), mRNA mm
MU19KSUBC:TC42027_AT Density-regulated protein (Denr), mRNA mm
MU11KSUBA:AA517134_RC_AT Density-regulated protein (Denr), mRNA mm
RG-U34B:RC_AA964533_AT similar to density regulated protein drp1 rn
RAE230A:1372764_AT similar to density regulated protein drp1 rn
RAT230_2:1372764_AT similar to density regulated protein drp1 rn
RAE230B:1391644_AT Similar to density regulated protein drp1 rn
RAT230_2:1391644_AT Similar to density regulated protein drp1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6413 translational initiation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3743 translation initiation factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55081 Hypothetical protein Y47D3A.21 [Caenorhabditis elegans] ref|NP_499450.1| Y47D3A.21 [Caenorhabditis elegans] sp|Q9NAH4|DENR_CAEEL Density-regulated protein homolog 4.0E-82
blast CAB55081 Hypothetical protein Y47D3A.21 [Caenorhabditis elegans] ref|NP_499450.1| Y47D3A.21 [Caenorhabditis elegans] sp|Q9NAH4|DENR_CAEEL Density-regulated protein homolog 8.0E-74
blast CAE67650 Hypothetical protein CBG13210 [Caenorhabditis briggsae] 3.0E-71
blast CAE67650 Hypothetical protein CBG13210 [Caenorhabditis briggsae] 9.0E-64
blast AAF48679 CG9099-PA [Drosophila melanogaster] gb|AAL28305.1| GH20858p [Drosophila melanogaster] ref|NP_573176.1| CG9099-PA [Drosophila melanogaster] 8.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR001950 EMBL-EBI Translation initiation factor SUI1 1.4E-30
Pfam IPR001950 EMBL-EBI Translation initiation factor SUI1 1.5E-32
Sequence
Target Sequence 
>C. ELEGANS:187631_AT
agactgctgttattcaatctctggctccagggccaattgatggagtttcttatccattga
aaatggtttattgtggacaatgctcaatgccaccagaatactgtgactattcgggacaaa
cggacgtctgtcgtgcttgggccactcaaaatgctccagaacttctcgaaggtcttgaaa
tttccgatgaaccagcagccgacggtgatgagaaaaagaagcagaagcgtggaggaaagg
gctcaaaaactggagccgctgctgctcaggctgctgcttccggcggaaaaaagaagggcg
gtggaccacagaaagtgacgttgcaacgggagccacgtggaaagaagagtgtcactgtta
ttaagggtctcgccacttttgacatcgatctaaaagtggcttcaaagctgttcgcccaga
aattcgcgtgcggctcgtcagtcaccggagccgatgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACTGCTGTTATTCAATCTCTGGC 581 71 26 Antisense
CAATCTCTGGCTCCAGGGCCAATTG 142 181 40 Antisense
GACAATGCTCAATGCCACCAGAATA 80 365 101 Antisense
CAAACGGACGTCTGTCGTGCTTGGG 35 189 142 Antisense
GCTTGGGCCACTCAAAATGCTCCAG 207 305 160 Antisense
AATGCTCCAGAACTTCTCGAAGGTC 699 165 175 Antisense
CGATGAACCAGCAGCCGACGGTGAT 200 249 210 Antisense
AGTGACGTTGCAACGGGAGCCACGT 100 57 339 Antisense
TTAAGGGTCTCGCCACTTTTGACAT 332 683 386 Antisense
GTTCGCCCAGAAATTCGCGTGCGGC 596 441 435 Antisense
TCGTCAGTCACCGGAGCCGATGAGA 433 603 460 Antisense
Sequence Source Affymetrix Proprietary Database