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[187630_at]

Description C30G12.1 /REP_DB=WormBase Gene ID /WP=CE01832 /TR=SW:Q09255 /GB=AAC46670.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 35.8
(-2.5)
A 		147.7
(1.7)
P 		180.8
(3)
P 		22
(-3)
A 		159
B 10.2
(-3)
A 		180.1
(3)
P 		162.8
(2.4)
P 		63.4
(-1.1)
A 		170
C 30.4
(-3)
A 		197.7
(3)
P 		157.4
(1.6)
P 		58.8
(-2)
A 		167
avr 25.5
(-3) 		175.2
(3) 		167
(2.7) 		48.1
(-2.1) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 73.7
(-3)
A 		146.8
(2.7)
P 		123.2
(0.9)
P 		136.4
(1.9)
P 		150.1
(3)
P 		90.1
(-1.7)
A 		76
B 68.1
(-2.1)
A 		180.4
(3)
P 		117.1
(0.1)
P 		150.4
(1.6)
P 		101.7
(-0.6)
P 		48.2
(-3)
M 		132
C 35
(-3)
A 		143.6
(2.2)
P 		89
(-0.4)
A 		161.5
(3)
P 		91.2
(-0.3)
P 		70.1
(-1.3)
A 		127
avr 58.9
(-3) 		156.9
(3) 		109.8
(0.1) 		149.4
(2.5) 		114.3
(0.4) 		69.5
(-2.4) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 13
(-1.7)
A 		32.1
(0.9)
P 		47.3
(3)
P 		3.2
(-3)
A 		44
B 3.3
(-3)
A 		44.5
(3)
P 		37.7
(2)
P 		13.5
(-1.5)
A 		41
C 10.1
(-3)
A 		56.8
(3)
P 		54.8
(2.7)
P 		9.9
(-3)
A 		47
avr 8.8
(-3) 		44.5
(2.7) 		46.6
(3) 		8.9
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 13.6
(-3)
A 		52.2
(3)
P 		26.8
(-0.9)
P 		34.6
(0.3)
P 		45.3
(1.9)
P 		21.9
(-1.7)
A 		39
B 23.7
(-2.2)
A 		60
(3)
P 		28.4
(-1.5)
P 		39.8
(0.1)
P 		41.3
(0.3)
P 		18
(-3)
M 		42
C 13
(-3)
A 		43.8
(3)
P 		22.7
(-1.1)
A 		32.5
(0.8)
P 		29.5
(0.2)
P 		23.5
(-1)
A 		31
avr 16.8
(-3) 		52
(3) 		26
(-1.4) 		35.6
(0.2) 		38.7
(0.7) 		21.1
(-2.3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187630_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5614
Sequence Type Exemplar sequence
Representative Public ID C30G12.1 NCBI
Target Description C30G12.1 /REP_DB=WormBase Gene ID /WP=CE01832 /TR=SW:Q09255 /GB=AAC46670.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063123(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063123 NCBI Caenorhabditis elegans C30G12.1 (C30G12.1) mRNA, complete cds. 11/11 None
SNAP00000037595 ENSEMBL cdna:SNAP chromosome:CEL140:II:7300887:7301421:1 9/11 None
C30G12.1 ENSEMBL cdna:known chromosome:CEL140:II:7299502:7301421:1 gene:C30G12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037607 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7297708-7301417(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30G12.1
Entrez Gene 183060 Entrez gene
SwissProt Q09255 EMBL-EBI
WormBase CE29685 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL16307 Hypothetical protein C30G12.1 [Caenorhabditis elegans] ref|NP_495524.2| C30G12.1 [Caenorhabditis elegans] sp|Q09255|YQB1_CAEEL Hypothetical protein C30G12.1 in chromosome II 0.0
blast T15718 hypothetical protein C30G12.1 - Caenorhabditis elegans 0.0
blast CAE67589 Hypothetical protein CBG13131 [Caenorhabditis briggsae] 1.0E-167
blast AAL16307 Hypothetical protein C30G12.1 [Caenorhabditis elegans] ref|NP_495524.2| C30G12.1 [Caenorhabditis elegans] sp|Q09255|YQB1_CAEEL Hypothetical protein C30G12.1 in chromosome II 1.0E-79
blast T15718 hypothetical protein C30G12.1 - Caenorhabditis elegans 1.0E-79
blast CAE67589 Hypothetical protein CBG13131 [Caenorhabditis briggsae] 7.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR010480 EMBL-EBI Pepsin inhibitor-3-likeed 3.5E-33
Sequence
Target Sequence 
>C. ELEGANS:187630_AT
aatcctcaaattaccacgactactatgacaaccacaacaagaacatccacagccattcca
acaactaccacaactccaagacaaatatcacttcaaacgattccattttcaaccacaact
agacaaccaaattttgataaaaccaagactcctgcaacaatgccatcagcttcttcttct
tcactttcaagtattcaaacagttgttgatccaattatcttgaagttaatttcaaaggca
ttggaaaaaaatgaaatgattgatgaatattcattgaaacaggctctatcgatgagaaat
gttgcaactactactactcctcttccacttcgtttcattcttccaacacctgcagcccca
aatccatttctaccgtctacaagagttggaggtctttctcataatcatctattcattccc
catcaaccgtttactactcttgtttcgaccgattctagatattctgcaccgaaccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCTCAAATTACCACGACTACTA 117 167 826 Antisense
CCACGACTACTATGACAACCACAAC 299 275 839 Antisense
GATTCCATTTTCAACCACAACTAGA 288 433 924 Antisense
AAAACCAAGACTCCTGCAACAATGC 577 131 964 Antisense
TGCAACAATGCCATCAGCTTCTTCT 465 577 978 Antisense
AAATCCATTTCTACCGTCTACAAGA 528 117 1185 Antisense
GTTGGAGGTCTTTCTCATAATCATC 619 435 1210 Antisense
CATAATCATCTATTCATTCCCCATC 568 213 1225 Antisense
CCCATCAACCGTTTACTACTCTTGT 548 255 1244 Antisense
ACTACTCTTGTTTCGACCGATTCTA 197 101 1258 Antisense
TTCTAGATATTCTGCACCGAACCCT 566 689 1278 Antisense
Sequence Source Affymetrix Proprietary Database