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[187629_at]

Description C35D10.4 /REP_DB=WormBase Gene ID /WP=CE01198 /TR=SW:Q18486 /GB=AAA62560.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 33      4grp_high_8_8 > 59      6grp_highest_nonorm > 75      6grp_total > 35      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 35      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 918
1 2 3 4 range
A 1167.1
(3)
P 		1042
(2.1)
P 		1112.2
(2.6)
P 		341.2
(-3)
P 		826
B 1198.8
(3)
P 		996.2
(1.6)
P 		1078.1
(2.2)
P 		345.5
(-3)
P 		853
C 1124.9
(2)
P 		958
(0.7)
P 		1258.7
(3)
P 		457.8
(-3)
P 		801
avr 1163.6
(3) 		998.7
(1.7) 		1149.7
(2.9) 		381.5
(-3) 		782

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 628
1 2 3 4 5 6 range
A 1148
(3)
P 		1062.2
(1.9)
P 		958.5
(0.5)
P 		891.3
(-0.3)
P 		685.7
(-3)
P 		716.9
(-2.6)
P 		462
B 1149.2
(2.5)
P 		1020.1
(1.1)
P 		1190.6
(3)
P 		872.8
(-0.5)
P 		642.6
(-3)
P 		908.2
(-0.1)
P 		548
C 888.6
(0.6)
P 		1106.9
(3)
P 		1009.3
(1.9)
P 		958.9
(1.4)
P 		562.8
(-3)
P 		931.5
(1.1)
P 		544
avr 1061.9
(3) 		1063.1
(3) 		1052.8
(2.9) 		907.7
(0.8) 		630.4
(-3) 		852.2
(0.1) 		433
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 389
1 2 3 4 range
A 424.9
(3)
P 		226.2
(-0.2)
P 		290.8
(0.9)
P 		49.9
(-3)
P 		375
B 382.3
(3)
P 		246
(0.4)
P 		249.8
(0.4)
P 		73.6
(-3)
P 		309
C 372.4
(1.9)
P 		275.4
(0.3)
P 		438.7
(3)
P 		77.2
(-3)
P 		362
avr 393.2
(3) 		249.2
(0.4) 		326.4
(1.8) 		66.9
(-3) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 211.6
(-1.9)
P 		377.8
(3)
P 		208.8
(-2)
P 		226
(-1.5)
P 		206.9
(-2)
P 		174.5
(-3)
P 		203
B 399.8
(3)
P 		339.6
(0.9)
P 		289.1
(-0.9)
P 		231.2
(-3)
P 		261.1
(-1.9)
P 		338.7
(0.8)
P 		169
C 329.4
(2.7)
P 		337.7
(3)
P 		256.9
(-0.1)
P 		192.8
(-2.6)
P 		182.1
(-3)
P 		311.8
(2)
P 		156
avr 313.6
(1.3) 		351.7
(3) 		251.6
(-1.4) 		216.7
(-3) 		216.7
(-3) 		275
(-0.4) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187629_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7379
Sequence Type Exemplar sequence
Representative Public ID C35D10.4 NCBI
Target Description C35D10.4 /REP_DB=WormBase Gene ID /WP=CE01198 /TR=SW:Q18486 /GB=AAA62560.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065613(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065613 NCBI Caenorhabditis elegans COenzyme Q (ubiquinone) biosynthesis family member (coq-8) (coq-8) mRNA, complete cds. 11/11 None
SNAP00000029547 ENSEMBL cdna:SNAP chromosome:CEL140:III:4863399:4866823:1 11/11 None
GENEFINDER00000029562 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4863399:4866823:1 11/11 None
C35D10.4 ENSEMBL cdna:known chromosome:CEL140:III:4863388:4866910:1 gene:C35D10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4863398-4866823(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol coq-8
Ensembl C35D10.4
Entrez Gene 175647 Entrez gene
SwissProt Q18486 EMBL-EBI
WormBase CE32159 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13825_S_AT ABC1 family protein at
ATH1-121501:255594_AT ABC1 family protein at
CHICKEN:GGA.6127.1.S1_AT similar to Cabc1 protein gga
CHICKEN:GGA.6127.2.S1_A_AT similar to Cabc1 protein gga
HG-U133_PLUS_2:218168_S_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
HG-U133A:218168_S_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
HG-U133A_2:218168_S_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
HU35KSUBC:RC_AA470121_S_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
U133_X3P:G9910387_3P_A_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
U133_X3P:HS.273186.0.S1_3P_A_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
HG-U133B:222542_X_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
HG-U133_PLUS_2:222542_X_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
HG-U95B:45334_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
HU35KSUBD:RC_R87200_AT Chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
HG-U95C:64312_AT Chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
HG-U133_PLUS_2:241488_AT Chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
HG-U133B:241488_AT Chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
HG-U95E:81285_AT Chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
U133_X3P:HS.118241.0.A1_3P_AT Chaperone, ABC1 activity of bc1 complex like (S. pombe) hs
MG-U74BV2:108493_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) mm
MG-U74CV2:170821_I_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) mm
MOE430A:1417067_S_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) mm
MOUSE430A_2:1417067_S_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) mm
MOUSE430_2:1417067_S_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) mm
MOE430A:1417066_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) mm
MOUSE430A_2:1417066_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) mm
MOUSE430_2:1417066_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) mm
MG-U74CV2:135136_AT Chaperone, ABC1 activity of bc1 complex like (S. pombe), mRNA (cDNA clone MGC:31744 IMAGE:4922892) mm
MOE430B:1446945_AT Chaperone, ABC1 activity of bc1 complex like (S. pombe), mRNA (cDNA clone MGC:31744 IMAGE:4922892) mm
MOUSE430_2:1446945_AT Chaperone, ABC1 activity of bc1 complex like (S. pombe), mRNA (cDNA clone MGC:31744 IMAGE:4922892) mm
MU19KSUBA:TC16742_AT Chaperone, ABC1 activity of bc1 complex like (S. pombe), mRNA (cDNA clone MGC:31744 IMAGE:4922892) mm
RG-U34B:RC_AA849426_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) (predicted) rn
RG-U34B:RC_AA849426_G_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) (predicted) rn
RG-U34C:RC_AI232419_S_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) (predicted) rn
RAE230A:1372536_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) (predicted) rn
RAT230_2:1372536_AT chaperone, ABC1 activity of bc1 complex like (S. pombe) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_498014 COenzyme Q (ubiquinone) biosynthesis family member (coq-8) [Caenorhabditis elegans] gb|AAA62560.2| Coenzyme q (ubiquinone) biosynthesis protein 8 [Caenorhabditis elegans] sp|Q18486|YLC4_CAEEL Hypothetical protein C35D10.4 in chromosome III 0.0
blast CAE71104 Hypothetical protein CBG17957 [Caenorhabditis briggsae] 0.0
blast XP_624948 PREDICTED: similar to CG32649-PA [Apis mellifera] 1.0E-130
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 8.5
Pfam IPR004147 EMBL-EBI ABC1 protein 3.7E-58
Sequence
Target Sequence 
>C. ELEGANS:187629_AT
gagattttcctgtggcgattcatgcaaaccgatcctaattggtccaactttttcctcggg
aaacatccgaaaaccggcgagcctcgtcttgtacttctcgattttggagcatctagagca
tacggaaagaagtttgttgatatctacatgaatatcatcaaatcggcttatgatggtgat
aagaaaaaaattattgaatattctcgtgaaatcggttttctaactggatatgaaacatca
gtaatggaagatgcccacgttgaatctgtaatgattatgggtgaaactcttgcaagtaat
catccatataactttgctaatcaggatgtgacaatgagaattcaaaagttaataccagta
atgttggagcatagactaacgtccccaccagaagaaatctattcacttcatcgaaagtta
tccggttgctaccttcttgccgcaaaactcaaagctaccgtatcctgtggaggtcttttc
catg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATTTTCCTGTGGCGATTCATGC 455 397 1675 Antisense
GCGATTCATGCAAACCGATCCTAAT 140 291 1689 Antisense
GAAACATCCGAAAACCGGCGAGCCT 92 353 1734 Antisense
CCTCGTCTTGTACTTCTCGATTTTG 368 267 1756 Antisense
GGAAGATGCCCACGTTGAATCTGTA 697 531 1920 Antisense
ATCATCCATATAACTTTGCTAATCA 92 31 1973 Antisense
GTTGGAGCATAGACTAACGTCCCCA 168 435 2037 Antisense
TAACGTCCCCACCAGAAGAAATCTA 325 629 2051 Antisense
GAAAGTTATCCGGTTGCTACCTTCT 517 359 2087 Antisense
TGCTACCTTCTTGCCGCAAAACTCA 269 579 2101 Antisense
GTATCCTGTGGAGGTCTTTTCCATG 403 455 2134 Antisense
Sequence Source Affymetrix Proprietary Database