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[187628_s_at]

Description C30G12.6 /REP_DB=WormBase Gene ID /WP=CE25800 /TR=SW:Q09259 /GB=AAC46675.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 87      4grp_high_8_8 > 20      6grp_total > 87      4grp_total > 19      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 64.8
(3)
P 		46.8
(-3)
A 		51.1
(-1.6)
A 		49.3
(-2.2)
P 		18
B 50
(-2.2)
A 		58
(-1.3)
A 		43.6
(-3)
A 		93.8
(3)
P 		50
C 40.1
(-3)
A 		68.2
(-0)
P 		39.9
(-3)
P 		97.3
(3)
P 		57
avr 51.6
(-1.9) 		57.7
(-0.8) 		44.9
(-3) 		80.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 57.8
(-2.8)
A 		52.9
(-3)
P 		83.4
(-2)
P 		99.3
(-1.5)
P 		182.1
(1.1)
P 		242.6
(3)
P 		190
B 80.3
(-2.6)
P 		66.8
(-3)
P 		78.6
(-2.7)
P 		121.8
(-1.4)
P 		202
(0.8)
P 		279.1
(3)
P 		212
C 65.8
(-3)
A 		113.5
(-1.8)
P 		114.9
(-1.8)
P 		125.8
(-1.5)
P 		138.1
(-1.3)
P 		313.9
(3)
P 		248
avr 68
(-3) 		77.7
(-2.7) 		92.3
(-2.3) 		115.6
(-1.6) 		174.1
(0) 		278.5
(3) 		211
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 23.6
(3)
P 		10.2
(-1.9)
A 		13.4
(-0.7)
A 		7.2
(-3)
P 		16
B 15.9
(0.5)
A 		14.3
(-0.5)
A 		10.1
(-3)
A 		20
(3)
P 		10
C 13.3
(-3)
A 		19.6
(3)
P 		13.9
(-2.4)
P 		16.4
(-0)
P 		6
avr 17.6
(3) 		14.7
(-0.4) 		12.5
(-3) 		14.5
(-0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 10.7
(-3)
A 		18.8
(-2)
P 		18.2
(-2.1)
P 		25.2
(-1.2)
P 		54.9
(2.5)
P 		59.1
(3)
P 		48
B 27.9
(-2.4)
P 		22.2
(-2.8)
P 		19.1
(-3)
P 		32.2
(-2.1)
P 		82.1
(1.4)
P 		104.1
(3)
P 		85
C 24.4
(-3)
A 		34.6
(-2.2)
P 		29.3
(-2.6)
P 		25.3
(-2.9)
P 		44.7
(-1.5)
P 		105.1
(3)
P 		81
avr 21
(-3) 		25.2
(-2.6) 		22.2
(-2.9) 		27.6
(-2.4) 		60.6
(0.5) 		89.4
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187628_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5240
Sequence Type Exemplar sequence
Representative Public ID C30G12.6 NCBI
Target Description C30G12.6 /REP_DB=WormBase Gene ID /WP=CE25800 /TR=SW:Q09259 /GB=AAC46675.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063120(11), NM_063121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063120 NCBI Caenorhabditis elegans C30G12.6a (C30G12.6) mRNA, complete cds. 11/11 None
NM_063121 NCBI Caenorhabditis elegans C30G12.6b (C30G12.6) mRNA, complete cds. 11/11 None
SNAP00000038320 ENSEMBL cdna:SNAP chromosome:CEL140:II:7292206:7295946:-1 11/11 None
GENEFINDER00000038325 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7292206:7295946:-1 11/11 None
C30G12.6a ENSEMBL cdna:known chromosome:CEL140:II:7292155:7295946:-1 gene:C30G12.6 11/11 None
C30G12.6b ENSEMBL cdna:known chromosome:CEL140:II:7292188:7295946:-1 gene:C30G12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7292201-7295951(-) 100.0 100.0
Public Domain and Genome References
Ensembl C30G12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02454 Hypothetical protein C30G12.6a [Caenorhabditis elegans] ref|NP_495521.1| C30G12.6a [Caenorhabditis elegans] sp|Q09259|YQB6_CAEEL Hypothetical protein C30G12.6 in chromosome II 0.0
blast AAL02455 Hypothetical protein C30G12.6b [Caenorhabditis elegans] ref|NP_495522.1| C30G12.6b [Caenorhabditis elegans] 0.0
blast CAE67587 Hypothetical protein CBG13129 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187628_S_AT
gtgcatcagcagtgttcatactatcgatggagatgaagtaattccccaaaagaaacgtaa
aacagacaacgaagaggagctgtatccggagattgtacttgcgaatagaatggtcggacg
agcaaattcacatccatcttcatggatcattcgtcacgtgttcaccgcgatggccacatc
cttacggttggagtgtgttcccatgaaaattgtcgatacactgcatgaacttctagtaga
tacttacactgttgttcgcttcaactctaataaaactactcaaatcgctttcaagcgatt
tttgacacattgtgagaaggtgattacattacacgaacggatgaatgctctgaagttggg
tgtcgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCATCAGCAGTGTTCATACTATC 250 481 2688 Antisense
GCTGTATCCGGAGATTGTACTTGCG 405 295 2766 Antisense
GAGCAAATTCACATCCATCTTCATG 39 391 2807 Antisense
ATGGATCATTCGTCACGTGTTCACC 13 53 2829 Antisense
ATGGCCACATCCTTACGGTTGGAGT 151 53 2857 Antisense
ACGGTTGGAGTGTGTTCCCATGAAA 705 89 2871 Antisense
GTCGATACACTGCATGAACTTCTAG 666 473 2899 Antisense
TTGTTCGCTTCAACTCTAATAAAAC 320 707 2939 Antisense
AAACTACTCAAATCGCTTTCAAGCG 213 127 2960 Antisense
TACACGAACGGATGAATGCTCTGAA 398 643 3017 Antisense
ATGCTCTGAAGTTGGGTGTCGATTT 568 41 3032 Antisense
Sequence Source Affymetrix Proprietary Database