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[187627_at]

Description F46F11.3 /REP_DB=WormBase Gene ID /WP=CE10600 /TR=SW:P91301 /GB=AAK21381.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 17      6grp_total > 11      4grp_total > 30      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 167.3
(3)
P 		97.5
(-1.7)
P 		78.6
(-3)
M 		146.3
(1.6)
P 		89
B 199.2
(3)
P 		127.6
(-1.3)
P 		110.9
(-2.3)
P 		100.1
(-3)
P 		99
C 195
(2.2)
P 		157.4
(-0.7)
P 		126.3
(-3)
P 		206.2
(3)
P 		80
avr 187.2
(3) 		127.5
(-1.4) 		105.3
(-3) 		150.9
(0.3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 72.1
(-2.4)
A 		160
(3)
P 		73.5
(-2.3)
P 		119
(0.5)
P 		71.3
(-2.4)
A 		61.6
(-3)
A 		98
B 93.1
(0.8)
A 		130.8
(3)
P 		121.5
(2.5)
A 		64.2
(-0.9)
A 		73.1
(-0.4)
P 		28.9
(-3)
A 		102
C 111.7
(0)
A 		181.8
(3)
P 		124.1
(0.5)
M 		63.3
(-2)
A 		40.9
(-3)
A 		47.5
(-2.7)
A 		141
avr 92.3
(-0.5) 		157.5
(3) 		106.4
(0.3) 		82.2
(-1.1) 		61.8
(-2.1) 		46
(-3) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 60.9
(3)
P 		21.2
(-2.9)
P 		20.6
(-3)
M 		21.4
(-2.9)
P 		40
B 63.5
(3)
P 		31.5
(-1.5)
P 		25.7
(-2.4)
P 		21.3
(-3)
P 		42
C 64.6
(3)
P 		45.3
(-0.9)
P 		44
(-1.1)
P 		34.8
(-3)
P 		30
avr 63
(3) 		32.7
(-1.9) 		30.1
(-2.3) 		25.8
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 13.3
(-3)
A 		56.9
(3)
P 		16
(-2.6)
P 		30.2
(-0.7)
P 		21.5
(-1.9)
A 		15
(-2.8)
A 		44
B 32.4
(1)
A 		43.5
(3)
P 		29.5
(0.4)
A 		17
(-1.9)
A 		29.7
(0.5)
P 		10.8
(-3)
A 		33
C 41.4
(1)
A 		55.5
(3)
P 		31.6
(-0.4)
M 		12.7
(-3)
A 		13.2
(-2.9)
A 		15.9
(-2.6)
A 		43
avr 29
(-0.6) 		52
(3) 		25.7
(-1.1) 		20
(-2) 		21.5
(-1.8) 		13.9
(-3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187627_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2124
Sequence Type Exemplar sequence
Representative Public ID F46F11.3 NCBI
Target Description F46F11.3 /REP_DB=WormBase Gene ID /WP=CE10600 /TR=SW:P91301 /GB=AAK21381.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059238(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059238 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-83) (tag-83) mRNA, complete cds. 11/11 None
SNAP00000023444 ENSEMBL cdna:SNAP chromosome:CEL140:I:5601807:5603484:-1 11/11 None
GENEFINDER00000023460 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5602033:5603484:-1 11/11 None
F46F11.3 ENSEMBL cdna:known chromosome:CEL140:I:5601807:5603630:-1 gene:F46F11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5601806-5603630(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-83
Ensembl F46F11.3
Entrez Gene 185871 Entrez gene
SwissProt P91301 EMBL-EBI
WormBase CE10600 Wormbase
Functional Annotations
Ortholog
ID Title Organism
RG-U34C:RC_AI235749_AT similar to tensin rn
RAE230A:1371361_AT similar to tensin rn
RAT230_2:1371361_AT similar to tensin rn
Protein Similarities
Method ID Description E-Value
blast AAK21381 Temporarily assigned gene name protein 83 [Caenorhabditis elegans] ref|NP_491639.1| Temporarily Assigned Gene name family member (tag-83) [Caenorhabditis elegans] sp|P91301|YLPK_CAEEL Hypothetical protein F46F11.3 in chromosome I 1.0E-141
blast AAK21381 Temporarily assigned gene name protein 83 [Caenorhabditis elegans] ref|NP_491639.1| Temporarily Assigned Gene name family member (tag-83) [Caenorhabditis elegans] sp|P91301|YLPK_CAEEL Hypothetical protein F46F11.3 in chromosome I 1.0E-135
blast CAE68927 Hypothetical protein CBG14906 [Caenorhabditis briggsae] 1.0E-125
blast CAE68927 Hypothetical protein CBG14906 [Caenorhabditis briggsae] 1.0E-124
blast AAK21381 Temporarily assigned gene name protein 83 [Caenorhabditis elegans] ref|NP_491639.1| Temporarily Assigned Gene name family member (tag-83) [Caenorhabditis elegans] sp|P91301|YLPK_CAEEL Hypothetical protein F46F11.3 in chromosome I 1.0E-118
blast CAE68927 Hypothetical protein CBG14906 [Caenorhabditis briggsae] 1.0E-109
blast CAA79215 tensin [Gallus gallus] pir||A57075 tensin - chicken (fragment) gb|AAA73949.1| tensin 8.0E-40
blast CAA79215 tensin [Gallus gallus] pir||A57075 tensin - chicken (fragment) gb|AAA73949.1| tensin 9.0E-40
Sequence
Target Sequence 
>C. ELEGANS:187627_AT
gaatcattgctcaaggcgtcacaacaaattcaaaatgctcataataaacatatcagagta
tggaatgtatctcaacgtcgccatgacatcagttcttctctcgatgcaattccatttggt
tggccatcagaaactgctccatcacttgaaaaattatgcacaatttgtaaaaatttggat
caatggatgcttgaacatcctcttaatattgctgttatcttttgtaaaggaggtcttgaa
agatgtgcaattgttgttaatgcttttatgagattcaatgctatttctgcaacagacgat
tcagttgatgatcgattcagtatgcagaggttttctgaaagattcctaggacccgatgga
ccacccagttacaaaagatacctcggttatttctcatcactgttatctggtcgaatatct
gtcaactcagatcctttataccttcacaatataattttgacatttttcgagccaatcaac
gtctttctcaagatatacgagcgacttgtgccagtttatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCATTGCTCAAGGCGTCACAAC 29 329 181 Antisense
GTATGGAATGTATCTCAACGTCGCC 565 455 238 Antisense
AACGTCGCCATGACATCAGTTCTTC 120 145 254 Antisense
ATCAGTTCTTCTCTCGATGCAATTC 592 29 268 Antisense
TGGTTGGCCATCAGAAACTGCTCCA 617 549 297 Antisense
AAGATTCCTAGGACCCGATGGACCA 473 115 519 Antisense
AGATACCTCGGTTATTTCTCATCAC 198 67 556 Antisense
TTTCTCATCACTGTTATCTGGTCGA 604 671 570 Antisense
GTCAACTCAGATCCTTTATACCTTC 176 465 601 Antisense
TTTTCGAGCCAATCAACGTCTTTCT 605 673 644 Antisense
ACGAGCGACTTGTGCCAGTTTATCA 492 93 677 Antisense
Sequence Source Affymetrix Proprietary Database