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[187625_at]

Description C46H11.3 /REP_DB=WormBase Gene ID /WP=CE08785 /TR=SW:P91167 /GB=AAF99882.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      4grp_high_8_8 > 06      6grp_total > 0      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 67.9
(-1)
M 		49.4
(-1.7)
A 		14.7
(-3)
A 		174.1
(3)
P 		159
B 61.5
(-2.9)
P 		60.3
(-3)
P 		60.4
(-3)
P 		159.5
(3)
P 		99
C 66.7
(-2.3)
P 		50.6
(-3)
A 		65.2
(-2.4)
P 		187.6
(3)
P 		137
avr 65.4
(-2.1) 		53.4
(-2.7) 		46.8
(-3) 		173.7
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 52.1
(-0.7)
P 		42.1
(-3)
A 		60.8
(1.3)
P 		68.3
(3)
A 		49.5
(-1.3)
A 		65.9
(2.5)
A 		26
B 58.3
(-0.5)
A 		95.6
(3)
P 		62.2
(-0.1)
A 		31.5
(-3)
A 		71.9
(0.8)
P 		74.3
(1)
P 		64
C 57.8
(-1.2)
P 		68.2
(2.3)
P 		52.5
(-3)
A 		70.3
(3)
P 		69.3
(2.7)
A 		59.6
(-0.6)
P 		18
avr 56.1
(-3) 		68.6
(3) 		58.5
(-1.8) 		56.7
(-2.7) 		63.6
(0.6) 		66.6
(2) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 24.7
(2.8)
M 		10.7
(-1.1)
A 		3.8
(-3)
A 		25.5
(3)
P 		22
B 19.6
(-1.3)
P 		14.9
(-2.7)
P 		14
(-3)
P 		34
(3)
P 		20
C 22.1
(-0.4)
P 		14.6
(-3)
A 		22.7
(-0.1)
P 		31.6
(3)
P 		17
avr 22.1
(0.1) 		13.4
(-3) 		13.5
(-3) 		30.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 9.6
(-3)
P 		15
(1.2)
A 		13.2
(-0.2)
P 		17.3
(3)
A 		14.9
(1.1)
A 		16
(2)
A 		8
B 20.3
(0.1)
A 		31.8
(3)
P 		15.1
(-1.3)
A 		8.3
(-3)
A 		29.2
(2.3)
P 		27.7
(2)
P 		24
C 21.4
(2.3)
P 		20.8
(1.9)
P 		13.4
(-3)
A 		14.1
(-2.5)
P 		22.4
(3)
A 		19.9
(1.3)
P 		9
avr 17.1
(-0.5) 		22.5
(3) 		13.9
(-2.5) 		13.2
(-3) 		22.2
(2.8) 		21.2
(2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187625_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1511
Sequence Type Exemplar sequence
Representative Public ID C46H11.3 NCBI
Target Description C46H11.3 /REP_DB=WormBase Gene ID /WP=CE08785 /TR=SW:P91167 /GB=AAF99882.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059105 NCBI Caenorhabditis elegans C46H11.3 (C46H11.3) mRNA, complete cds. 11/11 None
SNAP00000043104 ENSEMBL cdna:SNAP chromosome:CEL140:I:5041492:5042055:1 11/11 None
GENEFINDER00000043157 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5041492:5042055:1 11/11 None
C46H11.3 ENSEMBL cdna:known chromosome:CEL140:I:5041492:5042055:1 gene:C46H11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5041491-5042055(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46H11.3
Entrez Gene 183522 Entrez gene
SwissProt P91167 EMBL-EBI
WormBase CE08785 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6306 DNA methylation inferred from electronic annotation QuickGO AmiGO
30833 regulation of actin filament polymerization inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5856 cytoskeleton inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
8170 N-methyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99882 Hypothetical protein C46H11.3 [Caenorhabditis elegans] ref|NP_491506.1| C46H11.3 [Caenorhabditis elegans] sp|P91167|ARPC5_CAEEL Probable actin-related protein 2/3 complex subunit 5 (ARP2/3 complex 16 kDa subunit) (p16-ARC) 1.0E-79
blast AAF99882 Hypothetical protein C46H11.3 [Caenorhabditis elegans] ref|NP_491506.1| C46H11.3 [Caenorhabditis elegans] sp|P91167|ARPC5_CAEEL Probable actin-related protein 2/3 complex subunit 5 (ARP2/3 complex 16 kDa subunit) (p16-ARC) 2.0E-76
blast CAE65717 Hypothetical protein CBG10797 [Caenorhabditis briggsae] 1.0E-41
blast CAE65717 Hypothetical protein CBG10797 [Caenorhabditis briggsae] 5.0E-40
blast CAE60572 Hypothetical protein CBG04201 [Caenorhabditis briggsae] 4.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR006789 EMBL-EBI ARP2/3 complex 16 kDa subunit (p16-Arc) 1.0E-80
Pfam IPR006789 EMBL-EBI ARP2/3 complex 16 kDa subunit (p16-Arc) 4.4E-78
Sequence
Target Sequence 
>C. ELEGANS:187625_AT
gttgatatttttcatccagctcattttgaagatattcaggaagaatctgcagattgtggg
ccaaatgtgcaagaggttcggcaatttctggagtcaaatcgacttgaatatgctcttcaa
tccgttctcttaaacccaccatttggtcattctgaacaggaactcaagaaccgtgctgtt
ctccttgtggccgaggttattcatgcatttcgacagaccgatattgaagaatcagttcac
aagctgtcaaatgaaaatggagacattctgatgaagtatatttacaaagcaatgcaacta
tgctctgattctgccacgtgtctttctctactattgtggcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGATATTTTTCATCCAGCTCATT 489 437 43 Antisense
GTGGGCCAAATGTGCAAGAGGTTCG 654 487 98 Antisense
GAGGTTCGGCAATTTCTGGAGTCAA 399 399 115 Antisense
CGACTTGAATATGCTCTTCAATCCG 86 253 142 Antisense
TAAACCCACCATTTGGTCATTCTGA 131 641 173 Antisense
ACTCAAGAACCGTGCTGTTCTCCTT 412 101 204 Antisense
GTTCTCCTTGTGGCCGAGGTTATTC 153 443 220 Antisense
GTTATTCATGCATTTCGACAGACCG 696 447 238 Antisense
GAATCAGTTCACAAGCTGTCAAATG 30 329 271 Antisense
TGCAACTATGCTCTGATTCTGCCAC 191 577 335 Antisense
GTGTCTTTCTCTACTATTGTGGCAT 401 487 360 Antisense
Sequence Source Affymetrix Proprietary Database