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[187624_at]

Description C30G12.3 /REP_DB=WormBase Gene ID /WP=CE01834 /TR=SW:Q09256 /GB=AAC46672.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 23
(-3)
A 		23.9
(-2.8)
A 		36.8
(-0.3)
A 		53.3
(3)
A 		30
B 10.9
(-2.7)
A 		9
(-3)
A 		20.1
(-1.1)
A 		43.6
(3)
A 		35
C 54
(1.5)
A 		46.5
(0.4)
A 		21.1
(-3)
A 		65.3
(3)
A 		44
avr 29.3
(-2.3) 		26.5
(-2.9) 		26
(-3) 		54.1
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 38.3
(0.6)
A 		3.4
(-3)
A 		61
(3)
A 		35.3
(0.3)
A 		22.3
(-1)
A 		40.8
(0.9)
A 		58
B 15.1
(-1.3)
A 		14.5
(-1.4)
A 		43.7
(3)
A 		42.2
(2.8)
A 		28.7
(0.8)
A 		3.7
(-3)
A 		40
C 6.7
(-2.9)
A 		61.5
(1.6)
A 		32.3
(-0.8)
A 		78
(3)
A 		4.9
(-3)
A 		14.1
(-2.2)
A 		73
avr 20
(-2.7) 		26.5
(-1.6) 		45.7
(1.9) 		51.8
(3) 		18.6
(-3) 		19.5
(-2.8) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 8.4
(1.4)
A 		5.2
(-3)
A 		9.6
(3)
A 		7.8
(0.5)
A 		4
B 3.5
(-1.9)
A 		2.2
(-3)
A 		4.7
(-0.9)
A 		9.3
(3)
A 		7
C 17.9
(3)
A 		13.4
(0.5)
A 		7.3
(-3)
A 		11
(-0.9)
A 		11
avr 9.9
(3) 		6.9
(-3) 		7.2
(-2.4) 		9.4
(2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.1
(-0.1)
A 		1.2
(-3)
A 		13.3
(3)
A 		9
(0.9)
A 		6.7
(-0.3)
A 		9.9
(1.3)
A 		12
B 5.3
(-0.7)
A 		4.8
(-1)
A 		10.6
(2.4)
A 		11.2
(2.7)
A 		11.7
(3)
A 		1.4
(-3)
A 		10
C 2.5
(-2.7)
A 		18.8
(3)
A 		8.2
(-0.7)
A 		15.7
(1.9)
A 		1.6
(-3)
A 		4.7
(-1.9)
A 		17
avr 5
(-3) 		8.3
(-0.2) 		10.7
(1.9) 		12
(3) 		6.7
(-1.5) 		5.3
(-2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187624_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4469
Sequence Type Exemplar sequence
Representative Public ID C30G12.3 NCBI
Target Description C30G12.3 /REP_DB=WormBase Gene ID /WP=CE01834 /TR=SW:Q09256 /GB=AAC46672.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063118(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063118 NCBI Caenorhabditis elegans C30G12.3 (C30G12.3) mRNA, complete cds. 11/11 None
C30G12.3 ENSEMBL cdna:known chromosome:CEL140:II:7274663:7277154:1 gene:C30G12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7274658-7277150(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30G12.3
Entrez Gene 183061 Entrez gene
SwissProt Q09256 EMBL-EBI
WormBase CE01834 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46672 Hypothetical protein C30G12.3 [Caenorhabditis elegans] ref|NP_495519.1| C30G12.3 [Caenorhabditis elegans] sp|Q09256|YQB3_CAEEL Hypothetical protein C30G12.3 in chromosome II 5.0E-82
Sequence
Target Sequence 
>C. ELEGANS:187624_AT
tcatttcagttttaccgattcccgtaaaacttgtcttcaaacctctctcaaattttctga
cgatgggacactggagacgggaagcacgacgaagctcataggagccgagaccccgccctc
ttctgaccaccatgagccgaattccgtggcgttatcaggtcttaacactcatatatcaat
gaagttgttcgtttcatcatgcattgtaaacgggcttctccgaaaagtaagttgcaattt
cggaaaggagaaagaacatttaatgctggaaaaatccacgaaaataaagattgaaaggtc
ggataaggcttcaccaaacaacactcttaacgtcaagccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTTCAGTTTTACCGATTCCCGT 550 619 51 Antisense
TAAAACTTGTCTTCAAACCTCTCTC 117 641 75 Antisense
GAGACGGGAAGCACGACGAAGCTCA 131 391 124 Antisense
GAAGCTCATAGGAGCCGAGACCCCG 91 343 141 Antisense
GACCACCATGAGCCGAATTCCGTGG 346 383 175 Antisense
AATTCCGTGGCGTTATCAGGTCTTA 242 175 190 Antisense
TCAGGTCTTAACACTCATATATCAA 128 623 205 Antisense
AAGTTGTTCGTTTCATCATGCATTG 47 157 232 Antisense
CATGCATTGTAAACGGGCTTCTCCG 454 209 248 Antisense
GTCGGATAAGGCTTCACCAAACAAC 240 473 348 Antisense
AACAACACTCTTAACGTCAAGCCGG 679 129 367 Antisense
Sequence Source Affymetrix Proprietary Database