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[187623_at]

Description C01F6.7 /REP_DB=WormBase Gene ID /WP=CE02956 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q17563 protein_id:CAA92440.1
Cluster 6grp_total > 06      4grp_total > 46      6grp_cgc > 22      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 160.5
(3)
A 		151
(2.1)
A 		99.3
(-3)
A 		126.2
(-0.4)
A 		61
B 226.3
(3)
P 		118.6
(-1.4)
A 		164.9
(0.5)
A 		81
(-3)
A 		145
C 215.8
(3)
P 		150.1
(-0.1)
A 		89.1
(-3)
A 		111.3
(-1.9)
A 		127
avr 200.9
(3) 		139.9
(-0.9) 		117.8
(-2.3) 		106.2
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 236.1
(3)
P 		190.2
(1.3)
P 		73.1
(-3)
A 		76.2
(-2.9)
A 		128.9
(-0.9)
A 		97.9
(-2.1)
A 		163
B 167.6
(3)
P 		117.9
(0.3)
A 		80.3
(-1.8)
A 		116.6
(0.2)
A 		87.5
(-1.4)
A 		58.2
(-3)
A 		109
C 205.9
(3)
P 		140.8
(0.6)
A 		147.6
(0.9)
A 		103.1
(-0.7)
A 		39.9
(-3)
A 		65.1
(-2.1)
A 		166
avr 203.2
(3) 		149.6
(0.5) 		100.3
(-1.8) 		98.6
(-1.8) 		85.4
(-2.5) 		73.7
(-3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 58.5
(3)
A 		32.8
(-0.9)
A 		25.9
(-1.9)
A 		18.5
(-3)
A 		40
B 72.2
(3)
P 		29.3
(-1.7)
A 		38.2
(-0.7)
A 		17.3
(-3)
A 		55
C 71.5
(3)
P 		43.1
(-0.2)
A 		31.1
(-1.6)
A 		18.8
(-3)
A 		53
avr 67.4
(3) 		35.1
(-0.9) 		31.7
(-1.4) 		18.2
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 43.5
(0.2)
P 		67.6
(3)
P 		15.9
(-3)
A 		19.3
(-2.6)
A 		38.9
(-0.3)
A 		23.8
(-2.1)
A 		52
B 58.3
(3)
P 		39.2
(0)
A 		19.5
(-3)
A 		30.9
(-1.2)
A 		35.6
(-0.5)
A 		21.7
(-2.7)
A 		39
C 76.3
(3)
P 		43
(-0.2)
A 		37.6
(-0.7)
A 		20.7
(-2.3)
A 		12.9
(-3)
A 		21.8
(-2.2)
A 		63
avr 59.4
(3) 		49.9
(1.5) 		24.3
(-2.7) 		23.6
(-2.8) 		29.1
(-1.9) 		22.4
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8721
Sequence Type Exemplar sequence
Representative Public ID C01F6.7 NCBI
Target Description C01F6.7 /REP_DB=WormBase Gene ID /WP=CE02956 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q17563 protein_id:CAA92440.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171411 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-60) (tag-60) mRNA, complete cds. 11/11 A 
SNAP00000031443 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9121462:9122283:1 11/11 None
GENEFINDER00000031449 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9121462:9122283:1 11/11 None
C01F6.6b ENSEMBL cdna:known chromosome:CEL140:IV:9121366:9129913:1 gene:C01F6.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177736 2 1 NM_171410 175185_at (11), 191606_at (9)
NM_171411 187623_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9121467-9122289(+) 100.0 100.0
Public Domain and Genome References
Ensembl C01F6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD37352 Hypothetical protein C01F6.6b [Caenorhabditis elegans] emb|CAD36491.1| Hypothetical protein C01F6.6b [Caenorhabditis elegans] ref|NP_741479.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 0.0
blast CAA92439 Hypothetical protein C01F6.6a [Caenorhabditis elegans] emb|CAD36490.1| Hypothetical protein C01F6.6a [Caenorhabditis elegans] ref|NP_741478.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 1.0E-156
blast CAE74117 Hypothetical protein CBG21779 [Caenorhabditis briggsae] 1.0E-131
blast T18809 hypothetical protein C01F6.7 - Caenorhabditis elegans 1.0E-128
blast CAD37352 Hypothetical protein C01F6.6b [Caenorhabditis elegans] emb|CAD36491.1| Hypothetical protein C01F6.6b [Caenorhabditis elegans] ref|NP_741479.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.3E-6
Sequence
Target Sequence 
>C. ELEGANS:187623_AT
aggattcatcattattgcctccctcttcgtcgttcgtctattgcaacaactgtctaacac
ctcattcgtctcagaggacttgttctccagcctacgtctctactctctcaagacaaaagt
ctttgacgttgctaaagaaattgaagaaaccctcatcatctgcttcttccaccactacca
ccacatcatcgactgtatctttccgtgcaccttcacgtgcatcatcaacgatctccgacg
cttctaccatccgcccatctgaactcattgctatcgttccatctggtagccacgtgttgc
tgcgagttccgaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGATTCATCATTATTGCCTCCCTC 572 57 278 Antisense
CTTCGTCGTTCGTCTATTGCAACAA 599 219 302 Antisense
AACAACTGTCTAACACCTCATTCGT 253 135 322 Antisense
GTCTCAGAGGACTTGTTCTCCAGCC 83 471 345 Antisense
TACGTCTCTACTCTCTCAAGACAAA 87 649 370 Antisense
TTGAAGAAACCCTCATCATCTGCTT 631 703 418 Antisense
TACCACCACATCATCGACTGTATCT 540 649 453 Antisense
CACGTGCATCATCAACGATCTCCGA 248 197 491 Antisense
GCCCATCTGAACTCATTGCTATCGT 605 285 530 Antisense
TGCTATCGTTCCATCTGGTAGCCAC 401 575 546 Antisense
ACGTGTTGCTGCGAGTTCCGAAACT 561 93 569 Antisense
Sequence Source Affymetrix Proprietary Database