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[187622_s_at]

Description B0495.10 /REP_DB=WormBase Gene ID /WP=CE01760 /TR=SW:Q09219 /GB=AAA62529.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 30      6grp_total > 15      4grp_total > 31      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1291
1 2 3 4 range
A 1646
(3)
P 		765
(-1.6)
P 		508.3
(-3)
P 		997.8
(-0.4)
P 		1138
B 1793.1
(3)
P 		718.9
(-2)
P 		502.5
(-3)
P 		994.7
(-0.7)
P 		1291
C 1528.5
(3)
P 		653.2
(-3)
P 		695
(-2.7)
P 		1089.2
(-0)
P 		875
avr 1655.9
(3) 		712.4
(-2.2) 		568.6
(-3) 		1027.2
(-0.5) 		1087

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1295
1 2 3 4 5 6 range
A 1386.7
(3)
P 		1266.9
(2.2)
P 		798.9
(-0.7)
P 		640.5
(-1.8)
P 		465.7
(-2.9)
P 		445.3
(-3)
P 		941
B 1740
(3)
P 		999.6
(-0.4)
P 		797.8
(-1.4)
P 		721.4
(-1.7)
P 		449.8
(-3)
P 		539.2
(-2.6)
P 		1290
C 1405.7
(3)
P 		1258.5
(2.1)
P 		860.2
(-0.4)
P 		798.1
(-0.8)
P 		456.8
(-3)
P 		562
(-2.3)
P 		949
avr 1510.8
(3) 		1175
(1.1) 		819
(-0.9) 		720
(-1.5) 		457.4
(-3) 		515.5
(-2.7) 		1053
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 483
1 2 3 4 range
A 599.3
(3)
P 		166.1
(-2.6)
P 		132.9
(-3)
P 		146.1
(-2.8)
P 		466
B 571.8
(3)
P 		177.6
(-2.2)
P 		116.4
(-3)
P 		212
(-1.7)
P 		455
C 506
(3)
P 		187.8
(-2.9)
P 		242.2
(-1.9)
P 		183.7
(-3)
P 		322
avr 559
(3) 		177.2
(-2.8) 		163.8
(-3) 		180.6
(-2.7) 		395

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 255.6
(-0.4)
P 		450.6
(3)
P 		174
(-1.8)
P 		162.4
(-2.1)
P 		140.5
(-2.4)
P 		108.4
(-3)
P 		342
B 605.4
(3)
P 		332.7
(-0.9)
P 		193.7
(-2.8)
P 		191.1
(-2.9)
P 		182.7
(-3)
P 		201.1
(-2.7)
P 		423
C 521
(3)
P 		384
(0.8)
P 		218.9
(-1.9)
P 		160.5
(-2.8)
P 		147.8
(-3)
P 		188.1
(-2.4)
P 		373
avr 460.7
(3) 		389.1
(1.6) 		195.5
(-2.2) 		171.3
(-2.7) 		157
(-3) 		165.9
(-2.8) 		304
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187622_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5952
Sequence Type Exemplar sequence
Representative Public ID B0495.10 NCBI
Target Description B0495.10 /REP_DB=WormBase Gene ID /WP=CE01760 /TR=SW:Q09219 /GB=AAA62529.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063221(11), NM_182098(11), NM_182097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063221 NCBI Caenorhabditis elegans B0495.10a (B0495.10) mRNA, complete cds. 11/11 None
NM_182098 NCBI Caenorhabditis elegans B0495.10c (B0495.10) mRNA, complete cds. 11/11 None
NM_182097 NCBI Caenorhabditis elegans B0495.10b (B0495.10) mRNA, complete cds. 11/11 None
SNAP00000031535 ENSEMBL cdna:SNAP chromosome:CEL140:II:7711962:7714869:-1 11/11 None
GENEFINDER00000031540 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7711962:7719166:-1 11/11 None
B0495.10a ENSEMBL cdna:known chromosome:CEL140:II:7711823:7716254:-1 gene:B0495.10 11/11 None
B0495.10b ENSEMBL cdna:known chromosome:CEL140:II:7711832:7714658:-1 gene:B0495.10 11/11 None
B0495.10c ENSEMBL cdna:known chromosome:CEL140:II:7711832:7716254:-1 gene:B0495.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7711958-7716251(-) 98.1 100.0
Public Domain and Genome References
Ensembl B0495.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62529 Hypothetical protein B0495.10a [Caenorhabditis elegans] ref|NP_495622.1| B0495.10a [Caenorhabditis elegans] sp|Q09219|YP6A_CAEEL Hypothetical protein B0495.10 in chromosome II 0.0
blast AAN60539 Hypothetical protein B0495.10c [Caenorhabditis elegans] ref|NP_871898.1| B0495.10c [Caenorhabditis elegans] 0.0
blast CAE67475 Hypothetical protein CBG12979 [Caenorhabditis briggsae] 0.0
blast AAN60538 Hypothetical protein B0495.10b [Caenorhabditis elegans] ref|NP_871897.1| B0495.10b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010734 EMBL-EBI Copine 7.2E-68
Pfam IPR010734 EMBL-EBI Copine 7.2E-68
Pfam IPR010734 EMBL-EBI Copine 7.2E-68
Pfam IPR010734 EMBL-EBI Copine 7.2E-68
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495622.1 1 21-43
NP_871898.1 1 21-43
B0495.10a 1 21-43
B0495.10c 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:187622_S_AT
ggatgggtgactttgatttttcttcactacaaaaactatgctcaaaacgaaaagatggac
gccgagatgttgttcaattcattcatctgaaatccttgctcaatggagcagaagcaccgt
ggctcaataaatcgcgcattgctgagacagctcttcgtcatgtaccccaacacatggtac
agtatatgcataatgcaaatattgctgcaaaaccgccaattcaggtttgccggtctcctc
tgtttcatagttcgtcattaattcctgataagccgactgaatttgactttgatttggcaa
ataaaagaccgagtgtcggaattgagatccctagccttatgcctaatttaattctaccac
cggatctttcacctagaccccggcaagacagaagaggaagtgatacacaatatcttgatg
tggaaataatgagaggaagtttaacagttcgagttcccgagagatgtcactcagtacttc
aaacaagcagagagcaataccaacgaaggctaaaagagagaggattagcaaggatgaagt
tcccccgtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGGGTGACTTTGATTTTTCTTC 250 513 1670 Antisense
GATGGACGCCGAGATGTTGTTCAAT 464 407 1723 Antisense
GCACCGTGGCTCAATAAATCGCGCA 499 315 1783 Antisense
TGCTGAGACAGCTCTTCGTCATGTA 432 581 1809 Antisense
ACCGCCAATTCAGGTTTGCCGGTCT 83 85 1881 Antisense
TCTCCTCTGTTTCATAGTTCGTCAT 44 611 1903 Antisense
ATCCCTAGCCTTATGCCTAATTTAA 41 39 1996 Antisense
TTAATTCTACCACCGGATCTTTCAC 350 683 2017 Antisense
ACCTAGACCCCGGCAAGACAGAAGA 334 85 2040 Antisense
GTTCCCGAGAGATGTCACTCAGTAC 694 441 2122 Antisense
AGCAAGGATGAAGTTCCCCCGTGTA 479 71 2196 Antisense
Sequence Source Affymetrix Proprietary Database