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[187621_s_at]

Description ZK1236.7 /REP_DB=WormBase Gene ID /WP=CE00384 /TR=SW:P34623 /GB=AAA28188.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 20      4grp_high_8_8 > 39      6grp_highest_nonorm > 91      6grp_total > 75      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 157.4
(-3)
P 		164.7
(-2.2)
P 		159.4
(-2.8)
P 		210.7
(3)
P 		53
B 118.4
(-3)
P 		175.1
(3)
P 		173.2
(2.8)
P 		128
(-2)
P 		57
C 151.3
(-1.4)
P 		115.3
(-3)
P 		251.8
(3)
P 		176.5
(-0.3)
P 		137
avr 142.4
(-3) 		151.7
(-1.9) 		194.8
(3) 		171.7
(0.4) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 120.1
(-3)
P 		219.4
(1.1)
P 		265.2
(3)
P 		221.8
(1.2)
P 		186.1
(-0.3)
P 		233.9
(1.7)
P 		145
B 201.6
(-0.3)
P 		147.2
(-3)
P 		215.8
(0.4)
P 		233.7
(1.2)
P 		225.2
(0.8)
P 		269.6
(3)
P 		122
C 282.7
(3)
P 		157.2
(-3)
P 		238.1
(0.9)
P 		207.2
(-0.6)
P 		212.8
(-0.3)
P 		254.8
(1.7)
P 		126
avr 201.5
(-0.9) 		174.6
(-3) 		239.7
(2) 		220.9
(0.6) 		208
(-0.4) 		252.8
(3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 57.3
(3)
P 		35.8
(-1.9)
P 		41.7
(-0.5)
P 		30.8
(-3)
P 		27
B 37.7
(0.9)
P 		43.2
(3)
P 		40.1
(1.8)
P 		27.3
(-3)
P 		16
C 50.1
(-0.9)
P 		33.1
(-2.7)
P 		87.8
(3)
P 		29.8
(-3)
P 		58
avr 48.4
(1.2) 		37.4
(-1.2) 		56.5
(3) 		29.3
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 22.1
(-3)
P 		78
(3)
P 		57.8
(0.8)
P 		56.3
(0.7)
P 		56.2
(0.7)
P 		56.9
(0.7)
P 		56
B 70.2
(-0.5)
P 		49
(-3)
P 		52.4
(-2.6)
P 		61.9
(-1.5)
P 		91.5
(2)
P 		100.5
(3)
P 		52
C 104.8
(3)
P 		48
(-2.4)
P 		60.6
(-1.2)
P 		41.7
(-3)
P 		68.8
(-0.4)
P 		85.3
(1.1)
P 		63
avr 65.7
(-0.3) 		58.3
(-1.9) 		56.9
(-2.2) 		53.3
(-3) 		72.2
(1.1) 		80.9
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187621_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8072
Sequence Type Exemplar sequence
Representative Public ID ZK1236.7 NCBI
Target Description ZK1236.7 /REP_DB=WormBase Gene ID /WP=CE00384 /TR=SW:P34623 /GB=AAA28188.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066466(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066466 NCBI Caenorhabditis elegans ZK1236.7 (ZK1236.7) mRNA, complete cds. 11/11 A 
ZK1236.7.1 ENSEMBL cdna:known chromosome:CEL140:III:8439380:8443518:-1 gene:ZK1236.7 11/11 None
ZK1236.7.3 ENSEMBL cdna:known chromosome:CEL140:III:8439500:8443519:-1 gene:ZK1236.7 11/11 None
ZK1236.7.2 ENSEMBL cdna:known chromosome:CEL140:III:8439500:8443521:-1 gene:ZK1236.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8439632-8441011(-) 80.03 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1236.7
Entrez Gene 176194 Entrez gene
SwissProt P34623 EMBL-EBI
WormBase CE29628 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14948_AT expressed protein at
ATH1-121501:253897_AT expressed protein at
CANINE:1600245_AT similar to Protein C20orf116 homolog precursor cfa
CANINE_2:CFA.8555.1.S1_AT similar to Protein C20orf116 homolog precursor cfa
CANINE_2:CFAAFFX.10576.1.S1_S_AT similar to Protein C20orf116 homolog precursor cfa
DROSOPHILA_2:1629452_AT dm
DROSGENOME1:152746_AT dm
CHICKEN:GGA.7282.1.S1_AT similar to chromosome 20 open reading frame 116 gga
CHICKEN:GGAAFFX.8736.1.S1_AT similar to chromosome 20 open reading frame 116 gga
HU35KSUBA:AA174202_AT chromosome 20 open reading frame 116 hs
HU35KSUBB:RC_W73520_AT chromosome 20 open reading frame 116 hs
HG-U133A:218159_AT chromosome 20 open reading frame 116 hs
HG-U133_PLUS_2:218159_AT chromosome 20 open reading frame 116 hs
HG-U133A_2:218159_AT chromosome 20 open reading frame 116 hs
U133_X3P:G13027601_3P_AT chromosome 20 open reading frame 116 hs
HG-U95B:44134_AT chromosome 20 open reading frame 116 hs
HG-U133_PLUS_2:235640_AT Chromosome 20 open reading frame 116 hs
HG-U133B:235640_AT Chromosome 20 open reading frame 116 hs
HG-U95E:77247_AT Chromosome 20 open reading frame 116 hs
U133_X3P:HS.154366.0.A1_3P_X_AT Chromosome 20 open reading frame 116 hs
U133_X3P:HS.154366.0.A1_3P_AT Chromosome 20 open reading frame 116 hs
MOE430A:1434702_AT RIKEN cDNA 2600009E05 gene mm
MOUSE430A_2:1434702_AT RIKEN cDNA 2600009E05 gene mm
MOUSE430_2:1434702_AT RIKEN cDNA 2600009E05 gene mm
MG-U74AV2:104040_AT RIKEN cDNA 2600009E05 gene mm
MG-U74BV2:109812_F_AT RIKEN cDNA 2600009E05 gene mm
MU19KSUBC:TC40873_AT PREDICTED: hypothetical protein LOC77006 [Mus musculus], mRNA sequence mm
MU19KSUBC:TC40873_G_AT PREDICTED: hypothetical protein LOC77006 [Mus musculus], mRNA sequence mm
RG-U34A:RC_AI638949_S_AT similar to chromosome 20 open reading frame 116 (predicted) rn
RG-U34C:RC_AI073180_AT similar to chromosome 20 open reading frame 116 (predicted) rn
RAE230A:1388626_AT similar to chromosome 20 open reading frame 116 (predicted) rn
RAT230_2:1388626_AT similar to chromosome 20 open reading frame 116 (predicted) rn
RG-U34C:RC_AI102526_AT Similar to chromosome 20 open reading frame 116 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA28188 Hypothetical protein ZK1236.7 [Caenorhabditis elegans] ref|NP_498867.1| ZK1236.7 [Caenorhabditis elegans] sp|P34623|YO87_CAEEL Hypothetical protein ZK1236.7 in chromosome III 1.0E-111
blast CAE71254 Hypothetical protein CBG18134 [Caenorhabditis briggsae] 2.0E-87
blast S44893 ZK1236.7 protein - Caenorhabditis elegans 5.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498867.1 1 26-48
ZK1236.7.1 1 26-48
ZK1236.7.3 1 26-48
ZK1236.7.2 1 26-48
Sequence
Target Sequence 
>C. ELEGANS:187621_S_AT
aagatcggtaagcgaaaggctgcaaaattacaagctaaggaagaaaaacgacaaatgcga
gagtacgaagtcagagaaagagaagaacgtaaacgacgggaagaagaacgggaaaagaaa
cgtgatgaggaacgtgcaaaggaagaagctgacgaaaaggctgaggaagaacgattgaga
aaggaacgagaggaaaaagagagaaaagagcatgaggaatatttggctatgaaagcttcg
tttgcgattgaagaagaaggaaccgatgcaattgaaggtgaagaagccgagaacttgatt
cgtgattttgtcgattacgtgaaaaccaacaaagtggttaatattgacgaattatcttca
cattttggcctgaaatccgaagatgctgtaaatagattgcaacattttatcgaagaggga
cttgtacaaggtgttatggatgacagaggaaaattcatttatatttccgacgaggaattt
gcggcagttgcgaaattcataaatcaacgtggaagagtgtcaattcatgaaatcgccgaa
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGATCGGTAAGCGAAAGGCTGCAA 414 153 151 Antisense
GAAAGCTTCGTTTGCGATTGAAGAA 631 359 381 Antisense
GAAGCCGAGAACTTGATTCGTGATT 49 345 433 Antisense
TCGTGATTTTGTCGATTACGTGAAA 88 605 450 Antisense
AATATTGACGAATTATCTTCACATT 436 173 490 Antisense
ATCTTCACATTTTGGCCTGAAATCC 463 31 504 Antisense
TGGCCTGAAATCCGAAGATGCTGTA 634 543 516 Antisense
ATTGCAACATTTTATCGAAGAGGGA 240 5 546 Antisense
TTCCGACGAGGAATTTGCGGCAGTT 76 699 615 Antisense
ATTTGCGGCAGTTGCGAAATTCATA 181 17 627 Antisense
GTGTCAATTCATGAAATCGCCGAAC 452 485 667 Antisense
Sequence Source Affymetrix Proprietary Database