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[187620_s_at]

Description T02G5.13 /REP_DB=WormBase Gene ID /WP=CE04865 /TR=SW:Q22111 /GB=AAA82408.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 63      6grp_highest_nonorm > 64      6grp_total > 63      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 510.1
(3)
P 		402.1
(0.6)
P 		443
(1.5)
P 		237.8
(-3)
A 		272
B 449.2
(1.9)
P 		498.6
(2.8)
P 		507.5
(3)
P 		186.6
(-3)
A 		321
C 454.3
(1.7)
P 		487
(2.3)
P 		522.4
(3)
P 		207.5
(-3)
A 		315
avr 471.2
(2.6) 		462.6
(2.4) 		491
(3) 		210.6
(-3) 		280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 780
1 2 3 4 5 6 range
A 275.6
(-3)
P 		712.3
(0.9)
P 		943.5
(3)
P 		802.9
(1.7)
P 		687.7
(0.7)
P 		707.9
(0.9)
P 		668
B 549.9
(-2.6)
P 		509.3
(-3)
P 		1055.9
(3)
P 		796.6
(0.2)
P 		634.7
(-1.6)
P 		634.6
(-1.6)
P 		547
C 610.7
(-1.7)
P 		499
(-3)
P 		996.1
(3)
P 		823.8
(0.9)
P 		817.7
(0.8)
P 		765
(0.2)
P 		497
avr 478.7
(-3) 		573.5
(-1.9) 		998.5
(3) 		807.8
(0.8) 		713.4
(-0.3) 		702.5
(-0.4) 		520
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 185.7
(3)
P 		87.3
(-0.9)
P 		115.8
(0.2)
P 		34.8
(-3)
A 		151
B 143.2
(3)
P 		123.1
(1.8)
P 		117.6
(1.5)
P 		39.8
(-3)
A 		103
C 150.4
(1.7)
P 		140
(1.3)
P 		182.1
(3)
P 		35
(-3)
A 		147
avr 159.8
(3) 		116.8
(0.9) 		138.5
(2) 		36.5
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 50.8
(-3)
P 		253.3
(3)
P 		205.5
(1.6)
P 		203.6
(1.5)
P 		207.5
(1.6)
P 		172.3
(0.6)
P 		203
B 191.3
(-1.5)
P 		169.5
(-3)
P 		256.4
(2.9)
P 		211
(-0.2)
P 		257.9
(3)
P 		236.6
(1.6)
P 		88
C 226.3
(1)
P 		152.2
(-3)
P 		253.5
(2.4)
P 		165.7
(-2.3)
P 		264.6
(3)
P 		256.1
(2.5)
P 		112
avr 156.1
(-3) 		191.7
(-0.6) 		238.5
(2.7) 		193.4
(-0.4) 		243.3
(3) 		221.7
(1.5) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187620_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5823
Sequence Type Exemplar sequence
Representative Public ID T02G5.13 NCBI
Target Description T02G5.13 /REP_DB=WormBase Gene ID /WP=CE04865 /TR=SW:Q22111 /GB=AAA82408.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027131(11), NM_001027132(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027131 NCBI Caenorhabditis elegans T02G5.13a (T02G5.13) mRNA, complete cds. 11/11 None
NM_001027132 NCBI Caenorhabditis elegans T02G5.13b (T02G5.13) mRNA, complete cds. 11/11 None
T02G5.13a ENSEMBL cdna:known chromosome:CEL140:II:7099521:7101093:-1 gene:T02G5.13 11/11 None
T02G5.13b.1 ENSEMBL cdna:known chromosome:CEL140:II:7099732:7101093:-1 gene:T02G5.13 11/11 None
T02G5.13b.2 ENSEMBL cdna:known chromosome:CEL140:II:7099732:7100999:-1 gene:T02G5.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7099727-7100743(-) 100.0 100.0
Public Domain and Genome References
Ensembl T02G5.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022302 T02G5.13a [Caenorhabditis elegans] gb|AAA82408.2| Hypothetical protein T02G5.13a [Caenorhabditis elegans] sp|Q22111|YC5D_CAEEL Hypothetical protein T02G5.13 in chromosome II 0.0
blast NP_001022303 T02G5.13b [Caenorhabditis elegans] gb|AAT81191.1| Hypothetical protein T02G5.13b [Caenorhabditis elegans] 1.0E-168
blast NP_001022302 T02G5.13a [Caenorhabditis elegans] gb|AAA82408.2| Hypothetical protein T02G5.13a [Caenorhabditis elegans] sp|Q22111|YC5D_CAEEL Hypothetical protein T02G5.13 in chromosome II 1.0E-168
blast NP_001022303 T02G5.13b [Caenorhabditis elegans] gb|AAT81191.1| Hypothetical protein T02G5.13b [Caenorhabditis elegans] 1.0E-167
Protein Domains
Database ID Description E-Value
Pfam IPR005129 EMBL-EBI ArgK protein 1.0E-126
Pfam IPR005129 EMBL-EBI ArgK protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187620_S_AT
caatcaccaacttctggatcgctcggtggtgtcactcgtggaattcatgaagctgtgatc
ctctgcgaaggtgctggatacgatattgttatcattgagactgttggagtaggtcaatct
gaaacatccgtttccgatatgtgtgatatgatgtgtcttctgttgtcacctgctcatgga
gatgaattgcaaggtgttaaacgaggtattatggagatgagtgatttgttggttgtgacg
aaagatgatggagatttgaaagcgaaagccaagatgacacaggctgaatacatttccgcg
ttgaaattcatgcgaccacgactcgatgtatggcgtccaaaagttatgagatcctcaatt
atggataaagaatctgtatcagaagtttgttcgagtttgtacgaattctgggatacaatc
ggagaatcaggagatttggaaagaaggcgacaggatcaaatgaaaaaatggatgtggaat
catgttaaagacgaaattatgtccgttttccaaaagcatccgaaaatagcacatttggca
ccgaaactggaaaatgaaattcgaagtggaaaaatcacccctggtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCACCAACTTCTGGATCGCTCG 411 181 283 Antisense
CTCGGTGGTGTCACTCGTGGAATTC 355 227 304 Antisense
AGCTGTGATCCTCTGCGAAGGTGCT 196 79 333 Antisense
GAAACATCCGTTTCCGATATGTGTG 691 355 403 Antisense
CTGTTGTCACCTGCTCATGGAGATG 133 239 442 Antisense
CAGGCTGAATACATTTCCGCGTTGA 666 207 562 Antisense
GTTGAAATTCATGCGACCACGACTC 468 437 582 Antisense
GACCACGACTCGATGTATGGCGTCC 250 383 596 Antisense
ATGTCCGTTTTCCAAAAGCATCCGA 374 49 781 Antisense
ATAGCACATTTGGCACCGAAACTGG 65 21 808 Antisense
GAAGTGGAAAAATCACCCCTGGTCT 385 333 845 Antisense
Sequence Source Affymetrix Proprietary Database