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[187617_at]

Description ZK1236.6 /REP_DB=WormBase Gene ID /WP=CE00383 /TR=SW:P34622 /GB=AAA28189.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      4grp_highest_8_8 > 19      4grp_high_8_8 > 39      6grp_highest_nonorm > 63      6grp_total > 80      4grp_total > 40      6grp_highest_sub > 04      6grp_cgc > 86      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 464
1 2 3 4 range
A 347.6
(-3)
P 		564.3
(0.3)
P 		737.7
(3)
P 		422.1
(-1.9)
P 		390
B 303.2
(-3)
P 		538.9
(0.1)
P 		754.5
(3)
P 		528.6
(-0)
P 		451
C 431.4
(-3)
P 		479.7
(-2.1)
P 		767.1
(3)
P 		629.1
(0.5)
P 		336
avr 360.7
(-3) 		527.6
(-0.4) 		753.1
(3) 		526.6
(-0.5) 		392

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 581
1 2 3 4 5 6 range
A 475.1
(-2.8)
P 		479.2
(-2.8)
P 		461.6
(-3)
P 		958.9
(3)
P 		721.7
(0.1)
P 		673
(-0.4)
P 		497
B 635.7
(-0.7)
P 		506.8
(-2)
P 		569.9
(-1.4)
P 		994.2
(3)
P 		578.3
(-1.3)
P 		413.7
(-3)
P 		581
C 614.9
(-0.7)
P 		434.5
(-3)
P 		904.8
(3)
P 		686.7
(0.2)
P 		860
(2.4)
P 		460
(-2.7)
P 		470
avr 575.2
(-1.5) 		473.5
(-3) 		645.4
(-0.5) 		879.9
(3) 		720
(0.6) 		515.6
(-2.4) 		406
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 126.6
(-0)
P 		122.5
(-0.2)
P 		192.8
(3)
P 		61.8
(-3)
P 		131
B 96.7
(-3)
P 		133.1
(-0.2)
P 		174.8
(3)
P 		112.6
(-1.8)
P 		78
C 142.8
(-1.6)
P 		137.9
(-1.8)
P 		267.4
(3)
P 		106.1
(-3)
P 		161
avr 122
(-1.6) 		131.2
(-1.1) 		211.7
(3) 		93.5
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 87.6
(-3)
P 		170.4
(0.2)
P 		100.5
(-2.5)
P 		243.2
(3)
P 		217.8
(2)
P 		163.9
(-0.1)
P 		156
B 221.2
(1)
P 		168.7
(-1.5)
P 		138.4
(-3)
P 		263.3
(3)
P 		234.9
(1.6)
P 		154.3
(-2.2)
P 		125
C 227.9
(0.9)
P 		132.6
(-3)
P 		230.3
(1)
P 		138.1
(-2.8)
P 		278.3
(3)
P 		154
(-2.1)
P 		146
avr 178.9
(-1.5) 		157.2
(-2.9) 		156.4
(-3) 		214.9
(1) 		243.7
(3) 		157.4
(-2.9) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187617_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7976
Sequence Type Exemplar sequence
Representative Public ID ZK1236.6 NCBI
Target Description ZK1236.6 /REP_DB=WormBase Gene ID /WP=CE00383 /TR=SW:P34622 /GB=AAA28189.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066465(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066465 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-96) (pqn-96) mRNA, complete cds. 11/11 None
SNAP00000024914 ENSEMBL cdna:SNAP chromosome:CEL140:III:8438337:8439323:-1 11/11 None
GENEFINDER00000024921 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8438337:8439323:-1 11/11 None
ZK1236.6 ENSEMBL cdna:known chromosome:CEL140:III:8437998:8439323:-1 gene:ZK1236.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8438332-8439319(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-96
Ensembl ZK1236.6
Entrez Gene 176193 Entrez gene
SwissProt P34622 EMBL-EBI
WormBase CE00383 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28189 Prion-like-(q/n-rich)-domain-bearing protein protein 96 [Caenorhabditis elegans] ref|NP_498866.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-96) [Caenorhabditis elegans] sp|P34622|YO86_CAEEL Hypothetical protein ZK1236.6 in chromosome III 2.0E-39
blast CAE71255 Hypothetical protein CBG18135 [Caenorhabditis briggsae] 1.0E-24
Sequence
Target Sequence 
>C. ELEGANS:187617_AT
catctcatcctattgttggggctggagctgctccgacgatggctcctcagaacccatatg
gtcaacaacccttccaaccacaatttcaacaaggccaatatcagcagccttctgggcaac
aatatcaatcaatgcagcaacagttccaatctccacagcaacaagctccaactcagccga
cgcatccagatcgtgaatcctatcaaacagcacttccagcaaatgttaccccaggatgga
atgatcctccatcgatgctgccatctgctggaactacaccaaatcgattgagcaacatgc
ggaggcggcccgttgatccttcgatctcgggaaatgtcggttacggtacatcatcacaaa
cttcgaatccttatggtgcatcggcttctccatacggtgctcctcaacaaaatcctcagc
aataccaggagcaacctcagtcatatcaaacatatcaacaaccacaacagcagcagccac
aatacggtcaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTCATCCTATTGTTGGGGCTGG 84 213 65 Antisense
GAACCCATATGGTCAACAACCCTTC 63 331 114 Antisense
ATATCAGCAGCCTTCTGGGCAACAA 352 19 162 Antisense
AATGCAGCAACAGTTCCAATCTCCA 402 165 195 Antisense
GCCGACGCATCCAGATCGTGAATCC 706 283 240 Antisense
AATCCTATCAAACAGCACTTCCAGC 576 165 260 Antisense
TGGAATGATCCTCCATCGATGCTGC 242 547 301 Antisense
ATGCTGCCATCTGCTGGAACTACAC 194 43 319 Antisense
CGAATCCTTATGGTGCATCGGCTTC 235 253 428 Antisense
GGAGCAACCTCAGTCATATCAAACA 699 519 492 Antisense
GCAGCAGCCACAATACGGTCAACAG 41 311 534 Antisense
Sequence Source Affymetrix Proprietary Database