[Home] | [Total List]

[187615_at]

Description C35D10.1 /REP_DB=WormBase Gene ID /WP=CE01190 /TR=SW:Q18491 /GB=AAA62557.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 67      6grp_total > 18      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 983
1 2 3 4 range
A 1827.8
(-0.9)
P 		1850.2
(-0.7)
P 		2231.3
(3)
P 		1616.1
(-3)
P 		615
B 2320.8
(3)
P 		1853.8
(0.2)
P 		1858.7
(0.2)
P 		1337.5
(-3)
P 		983
C 1746.8
(0.4)
P 		1907.5
(3)
P 		1733
(0.2)
P 		1532.4
(-3)
P 		375
avr 1965.1
(3) 		1870.5
(1.8) 		1941
(2.7) 		1495.3
(-3) 		470

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 951
1 2 3 4 5 6 range
A 2056.4
(3)
P 		1575.3
(-2)
P 		1598.1
(-1.8)
P 		1887
(1.2)
P 		1480.4
(-3)
P 		2037
(2.8)
P 		576
B 1732.5
(2.8)
P 		1279.5
(-1.4)
P 		1105.5
(-3)
P 		1387.9
(-0.4)
P 		1468.4
(0.4)
P 		1753.1
(3)
P 		648
C 1924.3
(3)
P 		1499.6
(-1.4)
P 		1925.7
(3)
P 		1472.8
(-1.7)
P 		1670.6
(0.3)
P 		1349.7
(-3)
P 		576
avr 1904.4
(3) 		1451.5
(-3) 		1543.1
(-1.8) 		1582.6
(-1.3) 		1539.8
(-1.8) 		1713.3
(0.5) 		453
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 504
1 2 3 4 range
A 665.5
(3)
P 		401.6
(-0.7)
P 		583.3
(1.9)
P 		236.6
(-3)
P 		429
B 740.1
(3)
P 		457.8
(-0.7)
P 		430.7
(-1.1)
P 		285
(-3)
P 		455
C 578.3
(2.6)
P 		548.4
(2)
P 		604
(3)
P 		258.4
(-3)
P 		346
avr 661.3
(3) 		469.3
(0.1) 		539.3
(1.2) 		260
(-3) 		401

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 445
1 2 3 4 5 6 range
A 379.1
(-2.1)
P 		560.3
(3)
P 		348
(-3)
P 		478.6
(0.7)
P 		446.7
(-0.2)
P 		495.9
(1.2)
P 		212
B 602.8
(2.2)
P 		425.9
(-0.5)
P 		268.4
(-3)
P 		367.6
(-1.5)
P 		596.6
(2.1)
P 		653.7
(3)
P 		385
C 713.2
(3)
P 		457.6
(-0.7)
P 		490.1
(-0.2)
P 		296.2
(-3)
P 		540.6
(0.5)
P 		451.8
(-0.8)
P 		417
avr 565
(3) 		481.3
(0.4) 		368.8
(-3) 		380.8
(-2.6) 		528
(1.9) 		533.8
(2) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187615_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7979
Sequence Type Exemplar sequence
Representative Public ID C35D10.1 NCBI
Target Description C35D10.1 /REP_DB=WormBase Gene ID /WP=CE01190 /TR=SW:Q18491 /GB=AAA62557.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171106(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171106 NCBI Caenorhabditis elegans C35D10.1a (C35D10.1) mRNA, complete cds. 10/11 None
SNAP00000029555 ENSEMBL cdna:SNAP chromosome:CEL140:III:4879708:4881230:1 10/11 None
GENEFINDER00000029567 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4879708:4881230:1 10/11 None
C35D10.1a ENSEMBL cdna:known chromosome:CEL140:III:4879706:4881412:1 gene:C35D10.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175651 2 1 NM_171106 187615_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4878623-4881230(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35D10.1
Entrez Gene 175651 Entrez gene
SwissProt Q8WQG1 EMBL-EBI
WormBase CE29951 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1600373_X_AT similar to RIKEN cDNA 2900064A13 cfa
CANINE_2:CFA.2680.1.A1_S_AT similar to RIKEN cDNA 2900064A13 cfa
DROSOPHILA_2:1641494_AT dm
DROSGENOME1:147274_AT dm
CHICKEN:GGA.9933.1.S1_AT chromosome 15 hypothetical ATG/GTP binding protein gga
HU35KSUBA:AA092469_AT chromosome 15 open reading frame 24 hs
HU35KSUBD:RC_R77451_I_AT chromosome 15 open reading frame 24 hs
HU35KSUBD:RC_R63234_S_AT chromosome 15 open reading frame 24 hs
HG-U133A:217898_AT chromosome 15 open reading frame 24 hs
HG-U133_PLUS_2:217898_AT chromosome 15 open reading frame 24 hs
HG-U133A_2:217898_AT chromosome 15 open reading frame 24 hs
U133_X3P:G9910345_3P_AT chromosome 15 open reading frame 24 hs
HG-U95B:58575_AT chromosome 15 open reading frame 24 hs
HG-U133_PLUS_2:227535_AT Chromosome 15 open reading frame 24 hs
HG-U133B:227535_AT Chromosome 15 open reading frame 24 hs
HG-U95C:65992_S_AT Chromosome 15 open reading frame 24 hs
HG-U95D:67278_AT Chromosome 15 open reading frame 24 hs
HU35KSUBA:AA151565_AT Chromosome 15 open reading frame 24 hs
U133_X3P:HS.4245.1.A1_3P_AT Chromosome 15 open reading frame 24 hs
MG-U74BV2:108543_AT RIKEN cDNA 2900064A13 gene mm
MG-U74CV2:134182_AT RIKEN cDNA 2900064A13 gene mm
MOE430A:1417345_AT RIKEN cDNA 2900064A13 gene mm
MOUSE430A_2:1417345_AT RIKEN cDNA 2900064A13 gene mm
MOUSE430_2:1417345_AT RIKEN cDNA 2900064A13 gene mm
MOE430A:1417344_AT RIKEN cDNA 2900064A13 gene mm
MOUSE430A_2:1417344_AT RIKEN cDNA 2900064A13 gene mm
MOUSE430_2:1417344_AT RIKEN cDNA 2900064A13 gene mm
MOE430B:1439817_AT RIKEN cDNA 2900064A13 gene mm
MOUSE430_2:1439817_AT RIKEN cDNA 2900064A13 gene mm
MG-U74CV2:135772_AT RIKEN cDNA 2900064A13 gene (2900064A13Rik), mRNA mm
MU19KSUBA:TC24134_AT RIKEN cDNA 2900064A13 gene (2900064A13Rik), mRNA mm
MU19KSUBA:TC24134_G_AT RIKEN cDNA 2900064A13 gene (2900064A13Rik), mRNA mm
RG-U34C:RC_AI169640_AT similar to hypothetical protein (predicted) rn
RG-U34C:H32813_AT similar to hypothetical protein (predicted) rn
RAE230A:1388983_AT similar to hypothetical protein (predicted) rn
RAT230_2:1388983_AT similar to hypothetical protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_741119 C35D10.1a [Caenorhabditis elegans] gb|AAK93840.2| Hypothetical protein C35D10.1 [Caenorhabditis elegans] sp|Q8WQG1|YLC1_CAEEL Hypothetical protein C35D10.1 in chromosome III 1.0E-112
blast CAE71096 Hypothetical protein CBG17947 [Caenorhabditis briggsae] 2.0E-99
blast S72578 hypothetical protein C35D10.1 - Caenorhabditis elegans 1.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741119.1 1 143-165
C35D10.1a 1 143-165
SNAP00000029555 1 143-165
GENEFINDER00000029567 1 143-165
Sequence
Target Sequence 
>C. ELEGANS:187615_AT
atcgcacttccatctactcgaaattgtgcaaaatggtccgcagtgctcgtattcatttga
accatggccaatatatgggatttgttcgtcaagattgtacattccgtgttgatttcgtgc
ctactggaacctatattgttcaaatcgaaaatacagattttgtctttgagccaattcgcg
ttgatatcacatcaaaaggaaagatgagagctagaaaattgacaattcttcagccgaaca
atgtcaacactctcccatatccactccgtttatcagcacgaggtcctgctcgttacttca
gaaaacgtgaagaatggagaatcactgatatgctgttcagtccgatggttttgatgctcg
ttgtgccacttgttgtcatgctaattcttccaaaaatgacagcaaatgatcccgaactca
aaaaagaaatggagaacatgcaaatgccaaaagttgatatgccagatgtcggtgaaatga
tggctaacttctttggaggatccgcacctgccaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCACTTCCATCTACTCGAAATT 653 35 485 Antisense
AAAATGGTCCGCAGTGCTCGTATTC 210 133 514 Antisense
GTACATTCCGTGTTGATTTCGTGCC 118 461 581 Antisense
GATTTCGTGCCTACTGGAACCTATA 73 427 595 Antisense
CAGCCGAACAATGTCAACACTCTCC 335 203 715 Antisense
TCCACTCCGTTTATCAGCACGAGGT 116 589 744 Antisense
GGTCCTGCTCGTTACTTCAGAAAAC 44 503 766 Antisense
TATGCTGTTCAGTCCGATGGTTTTG 663 655 813 Antisense
TGGTTTTGATGCTCGTTGTGCCACT 358 551 830 Antisense
TTGTGCCACTTGTTGTCATGCTAAT 190 707 845 Antisense
TTTGGAGGATCCGCACCTGCCAAAA 372 665 976 Antisense
Sequence Source Affymetrix Proprietary Database