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[187614_at]

Description C05D10.3 /REP_DB=WormBase Gene ID /WP=CE01126 /TR=SW:Q11180 /GB=AAA20989.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 92      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 92      6grp_total > 84      4grp_total > 24      6grp_highest_sub > 04      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 115.7
(-3)
P 		185.9
(-0.1)
P 		247
(2.4)
P 		261.8
(3)
P 		146
B 110.8
(-3)
P 		191.9
(1)
P 		232.2
(3)
P 		218.9
(2.3)
P 		121
C 101.5
(-3)
P 		165.9
(-1.3)
P 		205
(-0.2)
P 		322.5
(3)
P 		221
avr 109.3
(-3) 		181.2
(-0.3) 		228.1
(1.5) 		267.7
(3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 168.4
(-3)
P 		183.9
(-2.7)
P 		236.4
(-1.8)
P 		511.1
(3)
P 		457.3
(2.1)
P 		388.8
(0.9)
P 		343
B 131.8
(-3)
P 		192
(-2.1)
P 		192.6
(-2.1)
P 		526.3
(2.7)
P 		545.4
(3)
P 		400.1
(0.9)
P 		414
C 121.7
(-3)
P 		150.4
(-2.6)
P 		224.3
(-1.7)
P 		599.9
(3)
P 		499.4
(1.7)
P 		352.2
(-0.1)
P 		478
avr 140.6
(-3) 		175.4
(-2.5) 		217.8
(-1.9) 		545.8
(3) 		500.7
(2.3) 		380.4
(0.6) 		405
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 42.1
(-2.1)
P 		40.3
(-2.5)
P 		64.6
(3)
P 		38.3
(-3)
P 		26
B 35.3
(-3)
P 		47.4
(0.9)
P 		53.8
(3)
P 		46.7
(0.7)
P 		19
C 33.6
(-3)
P 		47.7
(-0.8)
P 		71.4
(3)
P 		54.4
(0.3)
P 		38
avr 37
(-3) 		45.1
(-1.2) 		63.3
(3) 		46.5
(-0.8) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 31
(-3)
P 		65.4
(-1.1)
P 		51.5
(-1.9)
P 		129.6
(2.5)
P 		138
(3)
P 		94.7
(0.6)
P 		107
B 45.9
(-3)
P 		63.9
(-2.4)
P 		46.8
(-3)
P 		139.4
(0.2)
P 		221.6
(3)
P 		149.2
(0.5)
P 		176
C 45.1
(-3)
P 		45.9
(-3)
P 		57.1
(-2.4)
P 		120.6
(0.9)
P 		161.6
(3)
P 		117.9
(0.7)
P 		117
avr 40.7
(-3) 		58.4
(-2.2) 		51.8
(-2.5) 		129.9
(1) 		173.7
(3) 		120.6
(0.6) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187614_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7960
Sequence Type Exemplar sequence
Representative Public ID C05D10.3 NCBI
Target Description C05D10.3 /REP_DB=WormBase Gene ID /WP=CE01126 /TR=SW:Q11180 /GB=AAA20989.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065921(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065921 NCBI Caenorhabditis elegans C05D10.3 (C05D10.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000011501 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6084699:6087696:-1 9/11 None
SNAP00000011486 ENSEMBL cdna:SNAP chromosome:CEL140:III:6084989:6087645:-1 9/11 None
C05D10.3 ENSEMBL cdna:known chromosome:CEL140:III:6084679:6087396:-1 gene:C05D10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6084741-6087395(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D10.3
Entrez Gene 175859 Entrez gene
SwissProt Q11180 EMBL-EBI
WormBase CE29170 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:255889_AT ABC transporter family protein at
DROSOPHILA_2:1624393_AT white dm
DROSGENOME1:143410_AT white dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA20989 Hypothetical protein C05D10.3 [Caenorhabditis elegans] ref|NP_498322.1| C05D10.3 [Caenorhabditis elegans] sp|Q11180|YPC3_CAEEL Putative ABC transporter C05D10.3 in chromosome III 0.0
blast CAE73643 Hypothetical protein CBG21143 [Caenorhabditis briggsae] 0.0
blast B88474 protein C05D10.3 [imported] - Caenorhabditis elegans 0.0
blast AAA20989 Hypothetical protein C05D10.3 [Caenorhabditis elegans] ref|NP_498322.1| C05D10.3 [Caenorhabditis elegans] sp|Q11180|YPC3_CAEEL Putative ABC transporter C05D10.3 in chromosome III 1.0E-149
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 1.1E-37
Pfam IPR003439 EMBL-EBI ABC transporter 1.1E-37
Pfam IPR003439 EMBL-EBI ABC transporter 1.1E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498322.1 5 349-371,424-446,451-473,478-500,569-591
C05D10.3 5 349-371,424-446,451-473,478-500,569-591
GENEFINDER00000011501 4 453-475,480-502,507-529,601-623
SNAP00000011486 3 385-407,412-434,439-461
Sequence
Target Sequence 
>C. ELEGANS:187614_AT
cagtcacacctgctacgataatatcgataaatggaataatgttcaaccacattcgaaata
tgaactttatgcttcaattcccaaatgttccggttattacggcagaacttccaattgtac
tccgagaaaatgcaaatggagtgtatcgaacgagtgcatattttcttgcgaaaaacattg
cagaactccctcaatacataatccttccaattctatacaatacaattgtctactggatgt
ctgggctctatcctaacttctggaactattgcttcgcgtcgctggtaacaattttgatta
caaacgtggcaatttccatttcttacgctgtcgcaacgatctttgccaacactgatgtag
ccatgacaatacttccaatctttgtagttccaattatggcgtttggaggattcttcataa
catttgacgccattccatcttactttaaatggctctcttcgctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTCACACCTGCTACGATAATATC 404 207 1088 Antisense
TATGCTTCAATTCCCAAATGTTCCG 150 657 1155 Antisense
GGCAGAACTTCCAATTGTACTCCGA 651 533 1188 Antisense
AGAACTCCCTCAATACATAATCCTT 637 73 1269 Antisense
TGGGCTCTATCCTAACTTCTGGAAC 19 555 1329 Antisense
ATTGCTTCGCGTCGCTGGTAACAAT 156 7 1355 Antisense
CATTTCTTACGCTGTCGCAACGATC 199 215 1404 Antisense
CAACGATCTTTGCCAACACTGATGT 472 187 1421 Antisense
TAGCCATGACAATACTTCCAATCTT 487 647 1445 Antisense
ATAACATTTGACGCCATTCCATCTT 163 25 1504 Antisense
TACTTTAAATGGCTCTCTTCGCTCT 601 643 1528 Antisense
Sequence Source Affymetrix Proprietary Database