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[187613_at]

Description F22D6.8 /REP_DB=WormBase Gene ID /WP=CE05689 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q19721 protein_id:CAA95807.1
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_high_8_8 > 04      6grp_highest_nonorm > 91      6grp_total > 77      4grp_total > 05      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 121
(-0.6)
P 		60.5
(-3)
M 		79.9
(-2.2)
A 		210.2
(3)
P 		150
B 130.5
(-0.3)
P 		83
(-2.3)
P 		67.7
(-3)
A 		208.4
(3)
P 		141
C 92.8
(-1.6)
P 		49.7
(-3)
P 		78.6
(-2)
P 		231.2
(3)
P 		182
avr 114.8
(-1) 		64.4
(-3) 		75.4
(-2.6) 		216.6
(3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 174.3
(-0.7)
P 		83.8
(-3)
P 		146.6
(-1.4)
P 		147.3
(-1.4)
P 		154.6
(-1.2)
P 		319.7
(3)
P 		236
B 108.5
(-2.8)
P 		121.1
(-2.4)
P 		146.3
(-1.6)
P 		103.7
(-3)
P 		217.1
(0.7)
P 		289.8
(3)
P 		186
C 113.2
(-2.8)
P 		155.7
(-1.8)
P 		103.1
(-3)
P 		163.5
(-1.6)
P 		163.4
(-1.6)
P 		359.7
(3)
P 		257
avr 132
(-2.7) 		120.2
(-3) 		132
(-2.7) 		138.2
(-2.5) 		178.4
(-1.3) 		323.1
(3) 		203
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 44.1
(3)
P 		13.1
(-3)
M 		20.9
(-1.5)
A 		30.8
(0.4)
P 		31
B 41.6
(2.4)
P 		20.5
(-2)
P 		15.7
(-3)
A 		44.4
(3)
P 		29
C 30.7
(1)
P 		14.3
(-3)
P 		27.4
(0.2)
P 		39
(3)
P 		25
avr 38.8
(3) 		16
(-3) 		21.3
(-1.6) 		38.1
(2.8) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 32.1
(-2.7)
P 		29.8
(-3)
P 		31.9
(-2.7)
P 		37.4
(-2.1)
P 		46.7
(-0.9)
P 		77.8
(3)
P 		48
B 37.8
(-2.2)
P 		40.3
(-2)
P 		35.5
(-2.4)
P 		27.5
(-3)
P 		88.2
(1.5)
P 		108.1
(3)
P 		81
C 42
(-2)
P 		47.5
(-1.6)
P 		26.3
(-3)
P 		32.9
(-2.6)
P 		52.9
(-1.3)
P 		120.4
(3)
P 		94
avr 37.3
(-2.5) 		39.2
(-2.3) 		31.2
(-3) 		32.6
(-2.9) 		62.6
(-0.3) 		102.1
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187613_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1833
Sequence Type Exemplar sequence
Representative Public ID F22D6.8 NCBI
Target Description F22D6.8 /REP_DB=WormBase Gene ID /WP=CE05689 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q19721 protein_id:CAA95807.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000037653 ENSEMBL cdna:SNAP chromosome:CEL140:I:7107139:7107536:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7107069-7107467(-) 98.02 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T21252 hypothetical protein F22D6.8 - Caenorhabditis elegans 1.0E-40
Sequence
Target Sequence 
>C. ELEGANS:187613_AT
aaatgattgttcaatgctagctgaaaagaaaaagcttccgatttctgattcaaaagatgc
tccgaaacgtggtaggaaagcgaaagctaagcctgaagatggttatgaagctcacgagcc
acgagacgttaaatacttcctgagccttgtctttacgacaaaaatgatccaaatgctcat
cgacctgaaattcatcgttccatctacagtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGATTGTTCAATGCTAGCTGAA 172 119 66 Antisense
AAAAGCTTCCGATTTCTGATTCAAA 41 133 95 Antisense
GATTCAAAAGATGCTCCGAAACGTG 193 429 112 Antisense
GAAAGCTAAGCCTGAAGATGGTTAT 492 355 147 Antisense
GATGGTTATGAAGCTCACGAGCCAC 649 407 163 Antisense
AAGCTCACGAGCCACGAGACGTTAA 688 149 173 Antisense
GAGACGTTAAATACTTCCTGAGCCT 671 393 188 Antisense
TTCCTGAGCCTTGTCTTTACGACAA 170 699 202 Antisense
TGATCCAAATGCTCATCGACCTGAA 501 565 230 Antisense
ATCGACCTGAAATTCATCGTTCCAT 179 37 244 Antisense
AAATTCATCGTTCCATCTACAGTAC 55 117 253 Antisense
Sequence Source Affymetrix Proprietary Database